Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39250 352 / 1e-123 F-box family protein (.1) AT3G44326 47 / 4e-06 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013309 [exp] 41 / 0.0006 AT2G27310 247 / 4e-80 F-box family protein (.1) Lus10026472 [exp] 41 / 0.0008 AT4G33210 1225 / 0.0 SLOW MOTION, F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G119500 [exp] 404 / 1e-144 AT5G39250 347 / 8e-122 F-box family protein (.1) Potri.017G092800 [exp] 390 / 7e-139 AT5G39250 334 / 7e-117 F-box family protein (.1) Potri.006G220900 [exp] 43 / 0.0002 AT4G33210 1183 / 0.0 SLOW MOTION, F-box family protein (.1) Potri.001G452000 [exp] 42 / 0.0002 AT2G36090 115 / 2e-29 F-box family protein (.1) Potri.006G044801 [exp] 41 / 0.0005 AT5G04010 114 / 8e-30 F-box family protein (.1) Potri.002G082500 [exp] 41 / 0.0005 AT1G21760 474 / 7e-170 F-box protein 7 (.1) Potri.018G048700 [exp] 41 / 0.0006 AT4G33210 1204 / 0.0 SLOW MOTION, F-box family protein (.1) Potri.009G160700 [exp] 40 / 0.0007 AT2G27310 221 / 9e-70 F-box family protein (.1) Potri.005G178600 [exp] 40 / 0.0008 AT1G21760 479 / 6e-172 F-box protein 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032969 pacid=23160445 polypeptide=Lus10032969 locus=Lus10032969.g ID=Lus10032969.BGIv1.0 annot-version=v1.0 ATGCCGAAAGATGAAATTCTGAAGGCTGTTTTCCCTCTACTGGATGGCATAAACCTGGCTTCCTGCATGGCCGTATGCAAACAATGGAGAGATATGGCTA GCGATGATTATTTCTGGAAGTGCCAGTGTGCGAAGAGATGGCCGTCGATTTGCAAGAGAGCTAGCCTTCCTACCATGACCTACTATAAGCTATATCAAAC CTTCTACAAACGACAGCATCATCAGACCTTGCTTCCACCCAGACTTTCCTTTGACTCCTTGGAATTCTATATTGATATATGGGCTGAAGCTGAGTTGATC TTTTCGCAAGTAGTGCCAGGCCCCGTTTTGCAGGCTGGGATCAAACTCCCACCCCATGGAATTAGTGGCATGGTAAGGTATCACCTGGACGGTCCAGAGT ATAAGATGACCCTGCCTGTGGAGCCGACCTTCAAGGTGCCTTTGAGTCAGACGGTTAGTGTTTCAGTGCTTGTGGGACGCAAAGACACCAATAAGGTGGC TCGCATTATCGATAAGTCTATGTTTGATTATATAGATCGATCGTCCTATAGAGCATTGGCATTTGACTACCTGGACTTCTCCCCTGTGCACCCTTTCATA CCAAGTATCCGGGCATGGATATCTCTGCTTTTCATGGAAGATGGAAATGAGGGTGTGATTGATGTTTTCGGTATTGAGATGGACTTCTGTGATGCTGCTG ACTCCAAGGATAGGGTCTTATGGCTATTAGACATGCTTGATTGGAAATGA
AA sequence Show only first row Show all	>Lus10032969 pacid=23160445 polypeptide=Lus10032969 locus=Lus10032969.g ID=Lus10032969.BGIv1.0 annot-version=v1.0 MPKDEILKAVFPLLDGINLASCMAVCKQWRDMASDDYFWKCQCAKRWPSICKRASLPTMTYYKLYQTFYKRQHHQTLLPPRLSFDSLEFYIDIWAEAELI FSQVVPGPVLQAGIKLPPHGISGMVRYHLDGPEYKMTLPVEPTFKVPLSQTVSVSVLVGRKDTNKVARIIDKSMFDYIDRSSYRALAFDYLDFSPVHPFI PSIRAWISLLFMEDGNEGVIDVFGIEMDFCDAADSKDRVLWLLDMLDWK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39250			F-box family protein (.1)		Lus10032969 [exp]	0	1
AT1G51200			A20/AN1-like zinc finger famil...		Lus10031262 [exp]	2.0	0.8838
AT3G47300		SELT	SELT-like protein precursor (....		Lus10040658 [exp]	2.4	0.8632
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10035041 [exp]	4.5	0.8593
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Lus10002634 [exp]	6.2	0.8089
AT5G35460			unknown protein		Lus10021569 [exp]	7.5	0.8607
AT5G38050			RNA polymerase II transcriptio...		Lus10009106 [exp]	7.6	0.7888
AT1G29800			RING/FYVE/PHD-type zinc finger...		Lus10029271 [exp]	8.1	0.8569
AT2G23780			RING/U-box superfamily protein...		Lus10022492 [exp]	8.5	0.8456
AT3G20300			Protein of unknown function (D...		Lus10024308 [exp]	9.9	0.8527
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10004468 [exp]	11.7	0.8551

Compare expression of checked genes

Lus10032969 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.