Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51550 669 / 0 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT5G38990 597 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G28680 589 / 0 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT3G04690 589 / 0 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT5G39000 385 / 1e-119 Malectin/receptor-like protein kinase family protein (.1) AT5G54380 376 / 1e-116 THE1 THESEUS1, protein kinase family protein (.1) AT4G39110 372 / 9e-115 Malectin/receptor-like protein kinase family protein (.1) AT2G21480 369 / 2e-113 Malectin/receptor-like protein kinase family protein (.1) AT5G61350 366 / 9e-113 Protein kinase superfamily protein (.1) AT3G46290 365 / 1e-112 HERK1 hercules receptor kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032976 [exp] 1336 / 0 AT3G51550 682 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10003942 [exp] 1186 / 0 AT3G51550 656 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10029945 [exp] 817 / 0 AT3G51550 424 / 1e-137 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10014185 [exp] 671 / 0 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10022728 [exp] 610 / 0 AT3G51550 1184 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10028140 [exp] 486 / 1e-158 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10042844 [exp] 484 / 5e-158 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10039274 [exp] 441 / 4e-141 AT5G24010 997 / 0.0 Protein kinase superfamily protein (.1) Lus10016907 [exp] 428 / 6e-136 AT3G04690 967 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G138700 [exp] 671 / 0 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G095900 [exp] 655 / 0 AT3G51550 845 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096000 [exp] 644 / 0 AT3G51550 832 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096600 [exp] 641 / 0 AT3G51550 829 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096800 [exp] 639 / 0 AT3G51550 823 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.010G145600 [exp] 628 / 0 AT3G04690 1027 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.013G042500 [exp] 593 / 0 AT3G04690 1036 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.017G097001 [exp] 524 / 5e-175 AT3G51550 506 / 2e-168 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.009G026600 [exp] 478 / 2e-155 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.001G234200 [exp] 474 / 6e-154 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10032971 pacid=23160385 polypeptide=Lus10032971 locus=Lus10032971.g ID=Lus10032971.BGIv1.0 annot-version=v1.0 ATGAGGAGATTGGGCACACACGTGTGTCTCTCTTCTCTTTTACTTGTTATTTCTATCATCCATCATCTCGCCTCGGCTGCCGACAAGTACATACCAGTCG ATCACATATTCGTGAACTGCGGTTCCTCCAATCCCTCGGCAATTGACGAGGTTCTGAATTGGGAGTCGGACCACGCCACCTCAAAATACCTCCGAGTGGA AGATGGGTCATCGGTCTCCACAACACAAGACCCTTCAACTTCCCTCCCATCGGTGCCGTACCGAACCGCGCGGTTGTCTCGCTCCCAATTCACCTACGCT TTCCCCGTTAACTCGGGCCAAAAATTCATCCGCCTCCACTTCTTTGCTGCCAATTACACACCGGATTTCAACAAATCAGCCGCCTATTTCTCCGTCAAAT CCGGCCCATTCACCCTCCTTAACAACTTCAGCGCGGACCTCCGCGCACGAGCACTCCGCTTAGACGGGTTTCCCATGGAGTTCTGCTTAAACGTGGAACC AGATCAGCACTTCCTCAACTTAACCTTCGCTCCCACCTCGAGGGCCGGCTCGTACGCTTTCATCAACGGAATTGAAGTCGTCTCCATGCCCACGAATCTA TACTACACCAACCAGGACGATGCTGCAGGACCCTTCTCTTTTGGAACACATCAGCGAATCGAAAATGGCACCGCATTGCAGCTCATGTACAGAGTCAATG TCGGCGGCAGTTACATCTCTCCCAACCGTGACACCAGTATGTATCGGAGATGGGAGTCTGACCTGGACCCCGACGTGTATTTCGTCCCGGCTCCAAGCTC ACTTTATAAGAACACCTCAATTCAGCTTGATTACAGGAACAAAGACGAGATTCATCGGGTAGCGGCTCCAGATCCAGTCTACCAAACTGCCCGCGGAATG TCCAACAACACCGCCATAATTCTCTCCTACAACCTCACCTGGATGTTTCCGGTTGACCCCTTGTTCACCTATTTCGTTCGTCTCCATTTTTGCGAGTTCC AACCGTATATAACCGCCAGGGACAACAGGGTTTTCTGGGTCAATATCATGAATCAAACATCTACGGTTCCAGTGGATGTCGTTAAGGACGCTGGTGGGAA CGGAATCCCTCTATTCAAAGATTACATAACAAGAATGGAAGCAACTGAGAATAAGAACCTCTCTATCGCTCTTTCTCCTTTCAAAGACGCTAGTGCCTAC TTCGGCGCCATCCTCAATGGAGTTGAGATCTACAAATTGAGCTCCTCCGACAACAATCTAGCCGGACCCAACCCTGACCTGCCACCGCTTCAATCGCCAT CCTTCTCTTCCTCGTCGAAATCCAGTAAAAACCGGACTAAATTACTCGTTGCTGTAGCCGGCGGCATTGTTTCAGGTCTGTTGGTGCTCTTCCTTTTACT CTTCTTCATCGTTAGACAGAAATGGAGAGTTAAGGGCCGAAGAAAGTATAGCGACATCGGAGGCTCTGCTTCTCCTTCTACAGGGGTTGGGAAATTTTCT TTCATCGAATCAAAGAGCGGAACATCCAAGTACTCATCATCCACGCTACCCTCGGATCTCTGCCGCCGATTTTCACTGACCGAGATCAAATCCGCTACCC GGGATTTCAACGAAGATTTCATAATCGGAGTTGGAGGGTTCGGCAACGTCTACAAGGGGCTAATCAACGACGGCGGAGCTGGCGCGATGGTAAGCGTGGC CATCAAGAGGCTGAATCCAGGGTCGCAGCAAGGCGCCAACGAATTCAAAACGGAGATCGAGATGCTCTCCCAGCTCAGACACATTCACCTCGTATCCCTA ATGGGATACTGCTACGACGATGGCGAGATGATCCTAGTCTACGAGTACATGTCCAATGGCACACTCCAGGATCACCTCTACAAGACTGATAACCCTCCCA TTCCATGGAAGCAACGGCTGGAGATCTGCATTTGCGCTGCTCGAGGGCTTCACTACCTTCATTCGGGAGCCAACAACAGCATCATCCATCGCGATGTTAA GACTACCAACATCTTGCTGGACAACAAGTGGGTGGCCAAGGTGTCCGATTTTGGGCTGTCCAAAATCGGACCGGGAGCTCCGAATGCGCATGTTAGCACA GTGGTGAAAGGAAGCTTCGGGTACTTGGATCCAGAATACTACCGCCTACAACGGCTAACAGAAAAATCGGATGTGTACTCATTCGGTGTGGTGCTGTGGG AGGTTCTGTCGGCTCGTCCGTCGATTAATCGGATGGGGAACAACAAGAAGGCCGTGAGCTTGGCAGAGCAGGCAAAGCAAAGTCACCGAAGCGGAAGAGT TATAGAAATGGTTGACCCGCATTTGGACGGTGAAATTGTGGAGGAGTGTCTACACAAGTTCGCGGAGGTTGCGATGAGTTGCTTGAAGGAGAAAGGAGTT GATAGGCCATCGATGGGGGATGTGGTATGGGGGCTTGAATTTGCCATGGAGTTGCAGGAGAATGGCGGTGAAGGTGTGGAGTTAGTAGGGAAGCGAGTTG AGAATGAATTCCCGGTGATAAATGGTCCTTCAGGCAGCAGTGGCAGTGGTGGTTCAAACATGTTTAGCATAAACAGTGACATGGTGTTTGGTTTACAGAT GAGTGGGATAGTAACAGGCACAAGCACGAGTTGGACGAATTCGATTGATGAACAGAGTTTACTAGGCCAGAACAGCTCTGAGTCGTCATTGATGGAGTCT AGAGCTGTTTTCTCCGAAATTCTGGACCCGAGGGCTCGTTGA
AA sequence Show only first row Show all	>Lus10032971 pacid=23160385 polypeptide=Lus10032971 locus=Lus10032971.g ID=Lus10032971.BGIv1.0 annot-version=v1.0 MRRLGTHVCLSSLLLVISIIHHLASAADKYIPVDHIFVNCGSSNPSAIDEVLNWESDHATSKYLRVEDGSSVSTTQDPSTSLPSVPYRTARLSRSQFTYA FPVNSGQKFIRLHFFAANYTPDFNKSAAYFSVKSGPFTLLNNFSADLRARALRLDGFPMEFCLNVEPDQHFLNLTFAPTSRAGSYAFINGIEVVSMPTNL YYTNQDDAAGPFSFGTHQRIENGTALQLMYRVNVGGSYISPNRDTSMYRRWESDLDPDVYFVPAPSSLYKNTSIQLDYRNKDEIHRVAAPDPVYQTARGM SNNTAIILSYNLTWMFPVDPLFTYFVRLHFCEFQPYITARDNRVFWVNIMNQTSTVPVDVVKDAGGNGIPLFKDYITRMEATENKNLSIALSPFKDASAY FGAILNGVEIYKLSSSDNNLAGPNPDLPPLQSPSFSSSSKSSKNRTKLLVAVAGGIVSGLLVLFLLLFFIVRQKWRVKGRRKYSDIGGSASPSTGVGKFS FIESKSGTSKYSSSTLPSDLCRRFSLTEIKSATRDFNEDFIIGVGGFGNVYKGLINDGGAGAMVSVAIKRLNPGSQQGANEFKTEIEMLSQLRHIHLVSL MGYCYDDGEMILVYEYMSNGTLQDHLYKTDNPPIPWKQRLEICICAARGLHYLHSGANNSIIHRDVKTTNILLDNKWVAKVSDFGLSKIGPGAPNAHVST VVKGSFGYLDPEYYRLQRLTEKSDVYSFGVVLWEVLSARPSINRMGNNKKAVSLAEQAKQSHRSGRVIEMVDPHLDGEIVEECLHKFAEVAMSCLKEKGV DRPSMGDVVWGLEFAMELQENGGEGVELVGKRVENEFPVINGPSGSSGSGGSNMFSINSDMVFGLQMSGIVTGTSTSWTNSIDEQSLLGQNSSESSLMES RAVFSEILDPRAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10032971 [exp]	0	1
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10034279 [exp]	1.0	0.9126
AT3G53810			Concanavalin A-like lectin pro...		Lus10008597 [exp]	1.7	0.8554
AT1G64380	AP2_ERF		Integrase-type DNA-binding sup...		Lus10001898 [exp]	3.2	0.8617
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10034278 [exp]	5.2	0.8032
AT1G33560		ADR1	ACTIVATED DISEASE RESISTANCE 1...		Lus10032759 [exp]	7.1	0.7849
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10036899 [exp]	7.5	0.7884
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Lus10030716 [exp]	8.8	0.8024
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10032976 [exp]	9.5	0.8146
AT1G49000			unknown protein		Lus10042953 [exp]	9.8	0.8255
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10020018 [exp]	12.6	0.8240

Compare expression of checked genes

Lus10032971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.