Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39220 362 / 5e-122 alpha/beta-Hydrolases superfamily protein (.1) AT1G13820 358 / 3e-120 alpha/beta-Hydrolases superfamily protein (.1) AT4G36530 72 / 1e-13 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G19850 50 / 3e-06 alpha/beta-Hydrolases superfamily protein (.1) AT3G26820 50 / 3e-06 Esterase/lipase/thioesterase family protein (.1) AT4G39955 43 / 0.0004 alpha/beta-Hydrolases superfamily protein (.1) AT1G78210 43 / 0.0005 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036913 [exp] 369 / 2e-124 AT1G13820 466 / 5e-166 alpha/beta-Hydrolases superfamily protein (.1) Lus10037072 [exp] 331 / 7e-111 AT1G13820 367 / 2e-128 alpha/beta-Hydrolases superfamily protein (.1) Lus10028315 [exp] 69 / 4e-12 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031137 [exp] 55 / 2e-07 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10019631 [exp] 49 / 5e-06 AT1G72620 270 / 3e-89 alpha/beta-Hydrolases superfamily protein (.1) Lus10022106 [exp] 48 / 1e-05 AT1G72620 264 / 4e-87 alpha/beta-Hydrolases superfamily protein (.1) Lus10041529 [exp] 48 / 3e-05 AT5G41130 647 / 0.0 Esterase/lipase/thioesterase family protein (.1.2) Lus10041763 [exp] 46 / 8e-05 AT4G36530 484 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10004439 [exp] 44 / 0.0002 AT4G02340 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G093500 [exp] 427 / 5e-147 AT5G39220 435 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G120000 [exp] 424 / 7e-146 AT5G39220 433 / 9e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G158800 [exp] 397 / 2e-135 AT1G13820 489 / 4e-175 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G121000 [exp] 74 / 8e-14 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.019G063900 [exp] 44 / 0.0002 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G097400 [exp] 44 / 0.0003 AT1G78210 407 / 1e-143 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G129500 [exp] 42 / 0.001 AT4G25290 809 / 0.0 DNA photolyases;DNA photolyases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10032977 pacid=23160332 polypeptide=Lus10032977 locus=Lus10032977.g ID=Lus10032977.BGIv1.0 annot-version=v1.0 ATGGCTGCTGGGTTAGGGTGTGGGTTTAAATTGTTGGGATTAAAGAAATGGAGAGAGCAGTATAGTAATAGTAAACAGGGGTGCCAAATATGTGCTGCTG CTGGTGGAGAAAGATCAGTCGGAGATGTTGATGGCGGATTCCCAGAGTTTCTTCCTAAGGAGGTCTTCAACATCAAAGACCCATTTGCTAGATCTTTGGC TCAAAGAATCCAAAGGCTCCCTGTTCAGCTTGGTTCGCTTATTGCCGACAATAGTGTTCCCAAGTACCATGTTCCATCTCAGCAAGGAGGCGACGGCTAT GGATCTTGCCATCTCCAGACTCCGAATACTAGGGGTTCTTCGCACCACAACCATCATGAACTGGCCATCGGAATCACGGAGAATCACCTCTACCTCCAAT GTCCAAAAAACCTCATAAAAAAAGTTCTTCGACCGGTGAAAGTCGTTGGAGCTCCTGGTTTAGTTTTCTCCCTCTTGCTTGAGTTTTCCGTCTCATCCTC AACGTGGGATTTGCTCACCACCAAGATGCCGACATCCTACTCCTCCGCCGCGTTGTCCGCTCTAGCCTCTGCCTCACCAAAAGCTCCAATCGACCCCATG GAGTTGGCTCCTCCAAGCATTGGCCTCCCCAGTGCCGGGAAAAGAGCAGCAATCATAGCTCAGAGGCTTGATGACAACCAAGGGGAACCCACCACCGAAG GCGTCACAGTTGGGGACGAACAAGTTGATGTCGATGGTCAAGGAAAGCCATCCAAATCTCCAAGTAAGACTGGGTCCCTCCAGGCTTCGAGCAACAGGCA GATGGGCAGAGAAAGTTGCATTATGAGCAGCTGTGTGAAGCCTTTGACGACAAGCAACAACACTCCATTGGTTTTGCTCCATTGCTTTGACAGTTCATGC TTAGAATGGAGATGCACTTACCCTTTGCTGGAAGAGGCTGGTTTGGAATCCTGGGCTGTTGATATTCTTGGTTGGGGATTCTCCGACTTAGGTGTTTTCC AAGCTTGTGATGTTGCTTCAAAACGGCACCATCTTTACCAGCTATGGAAGTCATATGTGAAAAGGCCAATGGTTCTAGTAGGACCAAGCCTGGGCGCATC TGTCGCTATTGATTTCACTGTCAATTACCCAGAAGCAGTGGAGAAGTTAGTGTTGATAAATCCAAGCGTGTATGCAGATGGGACCGGGGAATTAGCCAAG TTACCTCCTGCAGTTGCATATGCAGGGGTCGAATTTTTGAGAAGCCTTCCCCTCCGACTTTACGCCAACCTTTTGGCCTTCAACTCTTCTAACAATCGTC TACCGTTCTCTACCATTTTGGATTGGACTAACGTTGGTCGCCTGCATTGTAAGCTTCCATGGTGGAAAGATGCAACTGTGAATTTCATGTTCAGCGGAGG TTACAATGTTGTCTCACAGATTAAACAGGTGGAGCAACCAACCCTCATCATTTATGGCGAGAAGGATGAGATTGTGGACTTTAAACTCATAGTGAAGCTG CACTGCCAACTGCCAAATGCAACAATGCGGCGAGTGGACGATTCTGGTCATCTGCCGCATGTTGATATGCCCAACTCCGTTACAAAGTTGATCCTTGATT TCCTTGACGATGAACGTCGACATCAACAAAAACTCCCAACAGGAGGGCCTTTTCAATATTTGGCTTTACCAGTTAGATATTAA
AA sequence Show only first row Show all	>Lus10032977 pacid=23160332 polypeptide=Lus10032977 locus=Lus10032977.g ID=Lus10032977.BGIv1.0 annot-version=v1.0 MAAGLGCGFKLLGLKKWREQYSNSKQGCQICAAAGGERSVGDVDGGFPEFLPKEVFNIKDPFARSLAQRIQRLPVQLGSLIADNSVPKYHVPSQQGGDGY GSCHLQTPNTRGSSHHNHHELAIGITENHLYLQCPKNLIKKVLRPVKVVGAPGLVFSLLLEFSVSSSTWDLLTTKMPTSYSSAALSALASASPKAPIDPM ELAPPSIGLPSAGKRAAIIAQRLDDNQGEPTTEGVTVGDEQVDVDGQGKPSKSPSKTGSLQASSNRQMGRESCIMSSCVKPLTTSNNTPLVLLHCFDSSC LEWRCTYPLLEEAGLESWAVDILGWGFSDLGVFQACDVASKRHHLYQLWKSYVKRPMVLVGPSLGASVAIDFTVNYPEAVEKLVLINPSVYADGTGELAK LPPAVAYAGVEFLRSLPLRLYANLLAFNSSNNRLPFSTILDWTNVGRLHCKLPWWKDATVNFMFSGGYNVVSQIKQVEQPTLIIYGEKDEIVDFKLIVKL HCQLPNATMRRVDDSGHLPHVDMPNSVTKLILDFLDDERRHQQKLPTGGPFQYLALPVRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39220			alpha/beta-Hydrolases superfam...		Lus10032977 [exp]	0	1
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10025706 [exp]	4.6	0.9445
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10005951 [exp]	6.8	0.9433
AT1G78780			pathogenesis-related family pr...		Lus10042792 [exp]	8.7	0.9315
AT5G17000			Zinc-binding dehydrogenase fam...		Lus10004379 [exp]	9.9	0.9317
AT1G47530			MATE efflux family protein (.1...		Lus10042130 [exp]	11.2	0.9268
AT5G06740			Concanavalin A-like lectin pro...		Lus10016257 [exp]	13.5	0.9194
					Lus10036438 [exp]	13.7	0.8915
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10020437 [exp]	15.2	0.9161
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042261 [exp]	16.7	0.9290
AT3G13110		SAT-M, SAT-A, S...	SERINE ACETYLTRANSFERASE 3, SE...		Lus10016603 [exp]	17.9	0.8710

Compare expression of checked genes

Lus10032977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.