Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29390 305 / 5e-99 RIK RS2-interacting KH protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015384 [exp] 613 / 0 AT3G29390 418 / 9e-142 RS2-interacting KH protein (.1) Lus10038932 [exp] 42 / 0.0008 AT5G51300 897 / 0.0 splicing factor-related (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G093600 [exp] 322 / 5e-105 AT3G29390 443 / 3e-149 RS2-interacting KH protein (.1) Potri.001G126400 [exp] 42 / 0.0005 AT5G51300 790 / 0.0 splicing factor-related (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032979 pacid=23160355 polypeptide=Lus10032979 locus=Lus10032979.g ID=Lus10032979.BGIv1.0 annot-version=v1.0 ATGATGAAGCAGATTCAGAAGTGCACTGGTGCTGTAGTGATAACTAGAGGCATGTATCGCCCTCCTAATGTACCTGCTGATGGTGAAAAACCATTGTATC TTCACATATCTGCAGGGGCACAGATGTATGCAGGGCTGTTGATAGGGCTGCTGCTATCGTTGGCCGTCGATAGGGCTGCTGCTATCGTTGACGAAATGTT GAAACAGGGCCCGAGCTTGCAGTCCTCTTTTCCGGTTTTCCCGACGGCTCTGAGCGATGGAGTGATGGCGCTGAGCACATGTGTATATTTGGGCTTTGAA GCAGATCCATCAAAGAACTTTGCTGCAAGAATTCGCGGCCCAGACGATCAGTGTATAAATCATATTATGAATGAAACAGGAGCAACTGTTGTGCTAAGAG GCTCTGGTTCTGGTCACCCTGGACATCAAAATGAGGCAGAAGCCCAGCAACCTCTTCATTTGTTCTTAACCTCAACTAACTCGAGAAATCTTGAAAATGT TCAATCTTTGGCTGAAAATCTTCTGCAGACGATTAGCTTAGAGTGTGGCGCGTCTAGGGTTGCATCGGGGAAGGTTTACAATGCTGTACCGCCTCCACAG CAGTTACTGGGTGGAGCTCAGACTTCATCACCCATGACATCAGTGCTGTCAACACCAGCAGTTCCTAGTATGACTGCTGTAGATGCTCAAGGTGTCATAT CATCTGCTAAGGCAACGAATGCCCCTGGCTTACATCAGCTGAACCCAGCTGCTTATCCACGCGATCTGTTAAATGGGGGTACCTGCTACCATGGATACGC TGGTATATATCCTCAGGCCACGCCTTTGCAACAAGTTGCTCTTGTTCTGAGACAGTCACCTTCTTCCATCACGTCCACATTTGCTCCTGCAGCATCAGTT GGGAGCAAAGCACCACTCATAAGAACATCTGCAGATACGGTTACAACCTTCAATTCTGAGAAGGAGAAGCGGCCTTCACAAAGACGAAAGTTTCAAGAGT TAGCAGTTGACTCAAAGGTCCACGGAAGACAACTCGAGGTATCCTTGGAGTTGGCTTTTCTCCAAGTCTTTTTGCATATTTTACTCATGATTTTTGCATG CATTAAGACACACAAGGAAGTGATCAAATTTTCTGCAATTTAG
AA sequence Show only first row Show all	>Lus10032979 pacid=23160355 polypeptide=Lus10032979 locus=Lus10032979.g ID=Lus10032979.BGIv1.0 annot-version=v1.0 MMKQIQKCTGAVVITRGMYRPPNVPADGEKPLYLHISAGAQMYAGLLIGLLLSLAVDRAAAIVDEMLKQGPSLQSSFPVFPTALSDGVMALSTCVYLGFE ADPSKNFAARIRGPDDQCINHIMNETGATVVLRGSGSGHPGHQNEAEAQQPLHLFLTSTNSRNLENVQSLAENLLQTISLECGASRVASGKVYNAVPPPQ QLLGGAQTSSPMTSVLSTPAVPSMTAVDAQGVISSAKATNAPGLHQLNPAAYPRDLLNGGTCYHGYAGIYPQATPLQQVALVLRQSPSSITSTFAPAASV GSKAPLIRTSADTVTTFNSEKEKRPSQRRKFQELAVDSKVHGRQLEVSLELAFLQVFLHILLMIFACIKTHKEVIKFSAI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29390		RIK	RS2-interacting KH protein (.1...		Lus10032979 [exp]	0	1
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10015305 [exp]	2.8	0.7703
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10019213 [exp]	3.7	0.8051
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10038317 [exp]	4.9	0.6997
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Lus10017819 [exp]	13.2	0.7174
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10016975 [exp]	13.9	0.6903
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10008755 [exp]	14.1	0.7150
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10028313 [exp]	17.6	0.5989
AT2G32760			unknown protein		Lus10022575 [exp]	18.5	0.7144
					Lus10020623 [exp]	22.4	0.6754
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10004304 [exp]	24.3	0.7116

Compare expression of checked genes

Lus10032979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.