Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02110 317 / 2e-106 SCPL25 serine carboxypeptidase-like 25 (.1) AT4G30610 263 / 3e-85 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G24000 246 / 9e-79 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT2G24010 240 / 7e-77 SCPL23 serine carboxypeptidase-like 23 (.1) AT2G35780 200 / 4e-61 SCPL26 serine carboxypeptidase-like 26 (.1) AT3G07990 195 / 4e-59 SCPL27 serine carboxypeptidase-like 27 (.1) AT3G63470 188 / 5e-56 SCPL40 serine carboxypeptidase-like 40 (.1) AT4G30810 187 / 9e-56 SCPL29 serine carboxypeptidase-like 29 (.1) AT5G08260 184 / 1e-54 SCPL35 serine carboxypeptidase-like 35 (.1) AT5G23210 179 / 8e-54 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015382 [exp] 432 / 9e-151 AT3G02110 731 / 0.0 serine carboxypeptidase-like 25 (.1) Lus10019954 [exp] 267 / 1e-86 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015489 [exp] 266 / 3e-86 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10041412 [exp] 202 / 3e-61 AT2G35770 580 / 0.0 serine carboxypeptidase-like 28 (.1) Lus10023505 [exp] 198 / 4e-60 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10040387 [exp] 195 / 6e-59 AT3G07990 715 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10037810 [exp] 181 / 3e-53 AT3G17180 565 / 0.0 serine carboxypeptidase-like 33 (.1) Lus10019747 [exp] 175 / 4e-51 AT3G63470 502 / 4e-175 serine carboxypeptidase-like 40 (.1) Lus10019749 [exp] 173 / 3e-50 AT3G63470 478 / 1e-165 serine carboxypeptidase-like 40 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G120100 [exp] 354 / 5e-121 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.017G094100 [exp] 354 / 5e-121 AT3G02110 758 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.006G183200 [exp] 270 / 3e-88 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.018G105700 [exp] 257 / 6e-83 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.010G220100 [exp] 214 / 2e-66 AT3G07990 735 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.008G041800 [exp] 213 / 6e-66 AT3G07990 736 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.009G056000 [exp] 197 / 1e-59 AT3G63470 557 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.008G041700 [exp] 196 / 2e-59 AT2G35770 608 / 0.0 serine carboxypeptidase-like 28 (.1) Potri.010G149400 [exp] 194 / 1e-58 AT3G17180 564 / 0.0 serine carboxypeptidase-like 33 (.1) Potri.009G055900 [exp] 191 / 3e-57 AT3G63470 570 / 0.0 serine carboxypeptidase-like 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10032980 pacid=23160451 polypeptide=Lus10032980 locus=Lus10032980.g ID=Lus10032980.BGIv1.0 annot-version=v1.0 ATGCGGAAACTGTTGACGATCAATAACCGGACGATACTGCTACGAGCACGAACCGGGAGGCCAGGTTGCTCATCAGTGGCATATGGTGCATCAGAAGAAG TTGGGCCATTCAGGATAAACAAGACTGCCTCAGGTTTATACCTCAACAAGTACTTGTGGAACTCCCTCGCCAACCTCCTCTTCCTCGAAACCCCTGCCGG TGTTGGTTTCTCTTACTCCAATCGATCCTCCGATTTGCTTGACACCGGTGGCATTCGCACTGGTTTGCTCCCCATTACTCGCTCACTATTCTATACTTGG CTAATGTGCCGAGGACTCGCTAGAGTTCCTGGTAAAATGGTTGGACTGGTTCCCCGGTATAAGAACCGACAAGTTTATCTAACGGGAGAGAGCTATGCGG GTCATTATGTACCTCAGCTAGCTAGACAGATTTTGCTCCACAACAAGAAATCCAAGCATCCAGTCATTAATCTCAAAGGAATCATGACAACTATTACGAC AACCTTGGAACAGAGCCATGCCATGATATCGGATACAACTTACAGGCGGCTCATCAATACTTGTGATTTCAGGAAGGAGAAGGAGTCTGATGAGTGTGAA TCCTTGTATAGTTATGCTATGGATCAAGAGTTTGTCAACATTGATCAGTACAACATCTATGCACCTTCTTGTAACCGCTCTGATGGCACTCGCCACTCCA TTCCATTGACTCACCTTCGTAATTCTAAGGTTCGTGATAATGATCAGATGATGATCACAAAGCAGCTGTCTGGTTATGACCCTTGTACGGAGAAGTATGC TGAGATATATTACAATAGGGAAGATGTGCAGAAAGCTCTCCATGCCAACACAACAAGTGTTGATTACTAA
AA sequence Show only first row Show all	>Lus10032980 pacid=23160451 polypeptide=Lus10032980 locus=Lus10032980.g ID=Lus10032980.BGIv1.0 annot-version=v1.0 MRKLLTINNRTILLRARTGRPGCSSVAYGASEEVGPFRINKTASGLYLNKYLWNSLANLLFLETPAGVGFSYSNRSSDLLDTGGIRTGLLPITRSLFYTW LMCRGLARVPGKMVGLVPRYKNRQVYLTGESYAGHYVPQLARQILLHNKKSKHPVINLKGIMTTITTTLEQSHAMISDTTYRRLINTCDFRKEKESDECE SLYSYAMDQEFVNIDQYNIYAPSCNRSDGTRHSIPLTHLRNSKVRDNDQMMITKQLSGYDPCTEKYAEIYYNREDVQKALHANTTSVDY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Lus10032980 [exp]	0	1
AT3G59160			F-box/RNI-like superfamily pro...		Lus10003943 [exp]	1.4	0.9691
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10014695 [exp]	2.0	0.9510
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014693 [exp]	2.4	0.9355
AT2G24210		AtTPS10	terpene synthase 10 (.1)		Lus10006355 [exp]	5.9	0.9024
AT5G42905			Polynucleotidyl transferase, r...		Lus10034950 [exp]	6.3	0.9079
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10041655 [exp]	8.8	0.8927
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Lus10042882 [exp]	9.8	0.8714
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10033755 [exp]	10.9	0.8815
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Lus10043414 [exp]	14.3	0.7845
					Lus10042300 [exp]	16.2	0.8536

Compare expression of checked genes

Lus10032980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.