Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03630 58 / 9e-10 unknown protein AT3G02125 58 / 2e-09 unknown protein AT1G74220 50 / 5e-07 unknown protein AT5G39200 48 / 1e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030710 [exp] 102 / 2e-25 AT5G39200 71 / 3e-14 unknown protein Lus10029645 [exp] 102 / 3e-25 AT2G03630 62 / 4e-11 unknown protein Lus10013196 [exp] 100 / 2e-24 AT3G02125 67 / 5e-13 unknown protein Lus10036900 [exp] 59 / 2e-09 AT2G03630 82 / 3e-17 unknown protein Lus10037082 [exp] 59 / 2e-09 AT2G03630 82 / 2e-17 unknown protein Lus10021153 [exp] 59 / 2e-09 AT5G08020 884 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10026665 [exp] 56 / 1e-08 AT2G03630 73 / 2e-14 unknown protein Lus10004647 [exp] 56 / 2e-08 AT2G03630 62 / 6e-11 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G094300 [exp] 73 / 8e-15 AT5G39200 70 / 3e-14 unknown protein Potri.004G120400 [exp] 71 / 3e-14 AT5G39200 68 / 1e-13 unknown protein Potri.010G158000 [exp] 61 / 2e-10 AT2G03630 108 / 7e-27 unknown protein Potri.012G061700 [exp] 60 / 4e-10 AT1G74220 91 / 1e-20 unknown protein Potri.008G096300 [exp] 59 / 1e-09 AT2G03630 91 / 2e-20 unknown protein Potri.015G057200 [exp] 45 / 2e-05 AT1G74220 77 / 9e-16 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032983 pacid=23160327 polypeptide=Lus10032983 locus=Lus10032983.g ID=Lus10032983.BGIv1.0 annot-version=v1.0 ATGGAGGACGGTGATCGTCATAGCAATGTCGCCCACCGTCCAAATAGCCCGTCCATAGGCGGCGATGTTCAAGATTTAAACACCACCAATCAACATTTCA AGAGGGATAGCCTAGACGTTGACGGTTCGGTCCACAGTAGCAATGCCCAATCATCGCCGCCGCGGCCGCCAACACCGACCTCCACCGCCGGCGTGGGCGG CGGTGGTGATGGATATGATCCGAAGAGGATACCATCGGGGGTGTTCACGTCAAAGTCAGGGAATGGGATAGATTGGAGCACGACTTCAAATGAGTCCTTG TTCAGCATTTACATGGGAAACAACAACAGCTTCTCCAGGGATCAAATTGCAATGTTGCAGAAATCTGGGGAACTTCCGTTGCTGGATCACGACTTGTCTT CTAATGTCCCGCCGGCCCCAGCCGCTTCTGGTCTCATGACGTGGCAGCCTCCACTTCCTCCTTCTAGCCCTGCTGCCTCTGTCAGAAGAAACATTGTTAA TAATAATGACATTGTTAATGACATTGTTAATAATAATGTTCCGGTTCCCCCGCCTTCCGAACCTCCAACAGTTGGTCTTAACAGGAACTCCACGGCCAGT AGCAGCACCACCACCAACAGGAACTCTACTAGCAGCACCAACTCTTTCCAGTTTCCTATATTACAGCAGGAACAAAGTGGAAGAAACAGCACGAGGATAA TAGAAGCAGAGCAGAATAAGCTTCCGGAGGCGTTGCTAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGTGGTGGTGGTGGTGACGACAACAAC ACAGAGCAGACGACGACAACAACACAAGAGCATAAGAAAAATGTAA
AA sequence Show only first row Show all	>Lus10032983 pacid=23160327 polypeptide=Lus10032983 locus=Lus10032983.g ID=Lus10032983.BGIv1.0 annot-version=v1.0 MEDGDRHSNVAHRPNSPSIGGDVQDLNTTNQHFKRDSLDVDGSVHSSNAQSSPPRPPTPTSTAGVGGGGDGYDPKRIPSGVFTSKSGNGIDWSTTSNESL FSIYMGNNNSFSRDQIAMLQKSGELPLLDHDLSSNVPPAPAASGLMTWQPPLPPSSPAASVRRNIVNNNDIVNDIVNNNVPVPPPSEPPTVGLNRNSTAS SSTTTNRNSTSSTNSFQFPILQQEQSGRNSTRIIEAEQNKLPEALLEEEEEEEEEEEVVVVVVTTTTQSRRRQQHKSIRKM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02125			unknown protein		Lus10032983 [exp]	0	1
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10043009 [exp]	3.9	0.7322
AT3G24650	B3	SIS10, ABI3	SUGAR INSENSITIVE 10, ABSCISIC...		Lus10011888 [exp]	6.9	0.6494
AT1G43245			SET domain-containing protein ...		Lus10018874 [exp]	14.1	0.6911
AT2G16910	bHLH	AMS, bHLH021	ABORTED MICROSPORES, basic hel...		Lus10042395 [exp]	38.6	0.6192
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Lus10011710 [exp]	42.4	0.6268
AT5G47570			unknown protein		Lus10008504 [exp]	43.9	0.6580
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Lus10032982 [exp]	44.0	0.6647
AT1G07260		UGT71C3	UDP-glucosyl transferase 71C3 ...		Lus10010474 [exp]	49.4	0.5943
AT1G05660			Pectin lyase-like superfamily ...		Lus10010584 [exp]	50.8	0.6025
AT3G20800			Cell differentiation, Rcd1-lik...		Lus10015136 [exp]	56.5	0.6269

Compare expression of checked genes

Lus10032983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.