Plant FIBer expression Database

Lus10032988 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G15600 80 / 4e-20 SP1L4 SPIRAL1-like4 (.1)
AT3G02180 79 / 5e-20 SP1L3 SPIRAL1-like3 (.1.2.3)
AT1G69230 76 / 1e-18 SP1L2 SPIRAL1-like2 (.1.2)
AT1G26355 75 / 2e-18 SP1L1 SPIRAL1-like1 (.1)
AT4G23496 71 / 4e-17 SP1L5 SPIRAL1-like5 (.1)
AT2G03680 70 / 3e-16 SKU6, SPR1 spiral1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034675
[exp]
77 / 3e-19 AT1G26355 127 / 5e-39 SPIRAL1-like1 (.1)
Lus10037069
[exp]
76 / 1e-18 AT1G26355 147 / 2e-47 SPIRAL1-like1 (.1)
Lus10000046
[exp]
76 / 2e-18 AT1G26355 146 / 7e-47 SPIRAL1-like1 (.1)
Lus10036916
[exp]
76 / 2e-18 AT1G26355 146 / 7e-47 SPIRAL1-like1 (.1)
Lus10004642
[exp]
72 / 4e-17 AT1G26355 147 / 2e-47 SPIRAL1-like1 (.1)
Lus10026672
[exp]
71 / 6e-17 AT1G26355 149 / 4e-48 SPIRAL1-like1 (.1)
Lus10026670
[exp]
71 / 7e-17 AT1G26355 150 / 1e-48 SPIRAL1-like1 (.1)
Lus10032297
[exp]
69 / 3e-16 AT1G69230 98 / 7e-28 SPIRAL1-like2 (.1.2)
Lus10024667
[exp]
68 / 3e-16 AT4G23496 74 / 2e-19 SPIRAL1-like5 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G095200
[exp]
84 / 4e-22 AT1G69230 94 / 2e-26 SPIRAL1-like2 (.1.2)
Potri.015G059100
[exp]
76 / 2e-18 AT1G26355 98 / 1e-27 SPIRAL1-like1 (.1)
Potri.008G097000
[exp]
75 / 2e-18 AT1G26355 127 / 2e-39 SPIRAL1-like1 (.1)
Potri.010G157600
[exp]
75 / 2e-18 AT1G26355 120 / 1e-36 SPIRAL1-like1 (.1)
Potri.003G131600
[exp]
72 / 1e-17 AT4G23496 81 / 4e-21 SPIRAL1-like5 (.1)
Potri.001G100100
[exp]
70 / 9e-17 AT4G23496 81 / 2e-21 SPIRAL1-like5 (.1)
Potri.T124504
[exp]
55 / 1e-09 AT1G19270 182 / 3e-53 DA1 (.1)
PFAM info
Representative CDS sequence
>Lus10032988 pacid=23160341 polypeptide=Lus10032988 locus=Lus10032988.g ID=Lus10032988.BGIv1.0 annot-version=v1.0
ATGGAAAAGGAAAAGATGGGGCGGGGGCGGGGAGTGAGTTGTGGAGGCGGCAAAAGTTCATTGGGCTATTTGTTTGGTTCTGACGATGGAAGCAGCAGCA
GCAGCAGCAGCAGCAACAACAACAATACTACTTCTGCTTCCAGCAAATTTTCACCAACTAAGAGTGAGCACATAACTAATTATAACAATAATAGCTCAAT
TAAAAAGGAAGTGGTTGATCAACCGTCCAAGTCCACACCCGGTCGCCTAAAGAACAATTATTATAGGTCTGAAGGCCAGAACTGTGGCAACTTCATCACG
GATCGACCAACGACAAAAGTTCATGCTGCCCCCGGAGGAGGTTCTTCATTAGGCTATCTGTTCGGGGATCCTTGTCAAAAATGA
AA sequence
>Lus10032988 pacid=23160341 polypeptide=Lus10032988 locus=Lus10032988.g ID=Lus10032988.BGIv1.0 annot-version=v1.0
MEKEKMGRGRGVSCGGGKSSLGYLFGSDDGSSSSSSSSNNNNTTSASSKFSPTKSEHITNYNNNSSIKKEVVDQPSKSTPGRLKNNYYRSEGQNCGNFIT
DRPTTKVHAAPGGGSSLGYLFGDPCQK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G69230 SP1L2 SPIRAL1-like2 (.1.2) Lus10032988
[exp]
0 1

Lus10032988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.