Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01220 514 / 0 Nucleotidylyl transferase superfamily protein (.1.2) AT3G27610 484 / 2e-171 Nucleotidylyl transferase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015379 [exp] 653 / 0 AT3G01040 833 / 0.0 galacturonosyltransferase 13 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G120200 [exp] 560 / 0 AT2G01220 589 / 0.0 Nucleotidylyl transferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01467 [flax] [poplar] CTP_transf_like Cytidylyltransferase-like
Representative CDS sequence Show only first row Show all	>Lus10032989 pacid=23160394 polypeptide=Lus10032989 locus=Lus10032989.g ID=Lus10032989.BGIv1.0 annot-version=v1.0 ATGACGGAAGCTTGGGTTCGAGCACTGGTGGAAGCTATCCACTCCGCCCCTTCCCAGGCTGTTATCTATCTTTCCGGCGGCGCTTCTCAGAGTCTTGGAT TGTTGATGTCCGTTCCTGGCGCTTCCTCTACAATTCTTGAAGCTCTGGTGCCTTACTCACGACTCTCCACCATTGATTTACTTGGCAAGATTCCTAGTAA TTTCTGTAGCCAGCAAACAGCTGAGGAAATGGCTTTGTTGGCTTACAATCGGGCTCTTAAGCTTTCCTTACCTGGTGTTCCGGTTATTGGTGTGGGCTTC ACTGGATCTCTAGCCACTAGTCGTCCAAAACTTGGGGATCACAGGTTTCATTTATCTACTAGAACCTGTAACCAGCTTTATTTGTCAACAATTACCTTGT CAAAGGGAATGCGAACCCGAGAGGAGGAAGATACGGTGTCAAGTCAATTCTTATTGAAGGCCATGGCAAAAGCATGCCATGTAGAGCAACCATCGGGGTC TCCTTTATCTGAAGCAGACTCATTAGATGAGTATGAAAAACAATTCACTGAAGCCGAAGAGCTACAGCAAGTTATAGATGGTCAAATATGCTTTAAGATG TACCCATTTTCAGGTGGCATCCTTGGCTCACCAACTTATTGTGGTGATTTGGATGCACCCAAGAATGAGAGGAAGATTATACTTCCTGGTTCTTTTAATC CCTTGCATAAAGGTCACCTCAAGCTTCTGGAGGTTGCTACTAGCATTGGCGGTGATGGCTATCCATGTTTCGAAATATCAGCTATAAATGCTGACAAGCC TCCTCTTTCTGTCTCACAAATCAAAGATCGGGTCAACCAATTTCAAAAAGTTGGAAAAACAATAATTGTATCTAATCAACCCTATTTCTACAAGAAGGCT GCGCTTTTCCCTGGAAGTGCTTTTGTCATCGGTGTGGACACTGCAGCAAGGTTAATAAATCCCAAGTATTATGATGGAAATTATGGGAAGATGGTGGACA TTTTAGGTGCATGCAAAGCAAGAGGAAGCACTTTTCTTGTTGGTGGACGGAGCATGGATGGAGCTTTCAAGATTCTTGGGGACTTGGAGATTCCAGAGGA GTTAAAAGATATGTTCATAGCTATACCAGCTGAAATGTTTCGCATGGATATATCCTCCACAGAAATACGGAAGCAGAGAATAAGCAATTCTTGA
AA sequence Show only first row Show all	>Lus10032989 pacid=23160394 polypeptide=Lus10032989 locus=Lus10032989.g ID=Lus10032989.BGIv1.0 annot-version=v1.0 MTEAWVRALVEAIHSAPSQAVIYLSGGASQSLGLLMSVPGASSTILEALVPYSRLSTIDLLGKIPSNFCSQQTAEEMALLAYNRALKLSLPGVPVIGVGF TGSLATSRPKLGDHRFHLSTRTCNQLYLSTITLSKGMRTREEEDTVSSQFLLKAMAKACHVEQPSGSPLSEADSLDEYEKQFTEAEELQQVIDGQICFKM YPFSGGILGSPTYCGDLDAPKNERKIILPGSFNPLHKGHLKLLEVATSIGGDGYPCFEISAINADKPPLSVSQIKDRVNQFQKVGKTIIVSNQPYFYKKA ALFPGSAFVIGVDTAARLINPKYYDGNYGKMVDILGACKARGSTFLVGGRSMDGAFKILGDLEIPEELKDMFIAIPAEMFRMDISSTEIRKQRISNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01220			Nucleotidylyl transferase supe...		Lus10032989 [exp]	0	1
AT5G07910			Leucine-rich repeat (LRR) fami...		Lus10000681 [exp]	2.6	0.9583
AT2G44420			protein N-terminal asparagine ...		Lus10020880 [exp]	3.5	0.9577
AT3G49640			Aldolase-type TIM barrel famil...		Lus10003486 [exp]	5.2	0.9488
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10017553 [exp]	5.2	0.9406
AT3G60510			ATP-dependent caseinolytic (Cl...		Lus10028182 [exp]	5.8	0.9343
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10018090 [exp]	6.5	0.9361
AT2G35450			catalytics;hydrolases (.1)		Lus10015759 [exp]	6.6	0.9432
AT1G49350			pfkB-like carbohydrate kinase ...		Lus10010290 [exp]	6.9	0.9363
AT5G14080			Tetratricopeptide repeat (TPR)...		Lus10041542 [exp]	7.9	0.9233
					Lus10034398 [exp]	8.1	0.9417

Compare expression of checked genes

Lus10032989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.