Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01040 866 / 0 GAUT13 galacturonosyltransferase 13 (.1.2) AT5G15470 865 / 0 GAUT14 galacturonosyltransferase 14 (.1) AT5G54690 511 / 2e-177 IRX8, GAUT12, LGT6 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) AT3G58790 397 / 4e-133 GAUT15 galacturonosyltransferase 15 (.1) AT5G47780 337 / 2e-108 GAUT4 galacturonosyltransferase 4 (.1) AT3G61130 336 / 1e-107 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT2G20810 311 / 2e-99 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT4G38270 311 / 5e-98 GAUT3 galacturonosyltransferase 3 (.1.2) AT3G25140 306 / 2e-97 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G18580 300 / 3e-95 GAUT11 galacturonosyltransferase 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013189 [exp] 913 / 0 AT5G15470 952 / 0.0 galacturonosyltransferase 14 (.1) Lus10030703 [exp] 892 / 0 AT3G01040 926 / 0.0 galacturonosyltransferase 13 (.1.2) Lus10015379 [exp] 852 / 0 AT3G01040 833 / 0.0 galacturonosyltransferase 13 (.1.2) Lus10035836 [exp] 519 / 1e-180 AT5G54690 887 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Lus10036619 [exp] 430 / 9e-148 AT5G54690 636 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Lus10041389 [exp] 340 / 1e-109 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10009311 [exp] 339 / 8e-109 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10038739 [exp] 337 / 3e-108 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10036540 [exp] 340 / 4e-108 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G090800 [exp] 892 / 0 AT5G15470 882 / 0.0 galacturonosyltransferase 14 (.1) Potri.004G124500 [exp] 881 / 0 AT5G15470 873 / 0.0 galacturonosyltransferase 14 (.1) Potri.001G416800 [exp] 526 / 0 AT5G54690 851 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Potri.011G132600 [exp] 517 / 7e-180 AT5G54690 871 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Potri.014G142000 [exp] 409 / 2e-137 AT3G58790 663 / 0.0 galacturonosyltransferase 15 (.1) Potri.006G001100 [exp] 337 / 1e-108 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.016G001700 [exp] 337 / 6e-108 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.014G073800 [exp] 331 / 2e-105 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.002G151400 [exp] 331 / 2e-105 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.013G146200 [exp] 311 / 2e-99 AT2G20810 820 / 0.0 galacturonosyltransferase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10032990 pacid=23160336 polypeptide=Lus10032990 locus=Lus10032990.g ID=Lus10032990.BGIv1.0 annot-version=v1.0 ATGCAGCTTCACATCTCGCCTAGTATGAGAAGCATCACGATATCAAGTAGTGGGAACAGCAGCAGTAGCAATGGAGGGTTTATTGACTTGATGAAGATCA AGGTCGCAGCTCGCCACATCTCTTATCGTACCCTTTTCCACACCATCCTCATTCTTGCTTTCCTGTTGCCCTTTGTCTTCATTCTCACTGCCCTCGTTAC CCTTGAAGGTGTCAACAACTGCTCCTCTTTCGATTGCTTAGGTAGGCGACTTGGGCCAAGACTTCTTGGCAGAGTTGATGATTCTGGGCAGAGGTTGGTT AAGGACCTCCACAAGATACTGAATCAAGTAAATACTGAGGAAATCCCTAATGGTCTAAAGCTCCCCGAGTCTTTTAGTGAACTTGTTTCTGAAATGAAGA GCAACCAATATGATGCGAAGACATTTGGTCTTACATTGAGAGCTATGATGGAAAAATTTGAACGGGAAATTAGGGAATCCAAGTTTGCAGAGCTGATGAA CAAACACTTTGCAGCAAGTTCTATTCCAAAAGGCATCCACTGTCTTTCTTTGCGTTTAACAGATGAATATTCCTCCAACGCTCATGCACGGAGGCAACTG CCTGCTCCAGAGTTGCTTCCTTTGCTATCTGACAACTCTTACCATCACTTCATACTGTCAACGGACAACATATTAGCTGCATCAGTTGTTGTGACTTCTA CGGTGGCATCATCTAAAACCCCTGAAAAGATTGTCTTTCATGTTGTCACTGACAAGAAAACTTATGCTGGGATGCATTCTTGGTTTGCGCTAAACCCTGT CTCTCCAGCCATCATTGAAGTTAAAGGCGTTCATCAGTTTGATTGGCTAACAAGGGATAATGTACCTGTGCTGGAAGCTGTTGAGAACCATAATGGTATC AGGAACTATTACCATGGAAACCATGTTGCAGGTGCAAATCTCAGTGATACAACTCCACGTATGTTTGCTTCAAAACTGCAAGCTAGAAGTCCGAAATACA TTTCCTTACTCAATCACCTCCGGATATATTTGCCTGAGCTATTTCCAAACCTTGACAAGGTGGTGTTTCTGGATGACGATGTCGTGATTCAGCGTGATCT TTCTCCACTTTGGGACATTGACCTTAAAGGAAAGGTTAATGGTGCGGTGGAAACATGTAAAGGTGAAGATGAGTGGGTGATGTCCAAGCGTTTCAAGAAC TACTTCAATTTTTCTCATCCCCTCATATCAAACAACTTGGACCCGCAAGAGTGTGCTTGGGCTTATGGAATGAATATATTTGATCTTCATAAATGGAGGG AAACAACTATAAGAGAAACTTACCATTCTTGGTTGAGAGAGAATCTGAAGTCAAACTTGACAATGTGGAAACTTGGAACGTTGCCGCCTGCTCTGATCGC ATTTAAAGGTCATGTGCATGCAATTGAGCCAGAATGGCATATGCTTGGGCTTGGGTATCAGAATAAGACAGACATTGAGAGTGTGACAAAGGCTGCAGTG ATCCACTACAATGGGCAGTCAAAACCGTGGTTGCCTATTGGATTTGAGCATCTGCGGCCGTTTTGGACAAAGTACGTTAATTACTCCAATGATTTCATAC GTAACTGCCACATCATGGAGACGTAG
AA sequence Show only first row Show all	>Lus10032990 pacid=23160336 polypeptide=Lus10032990 locus=Lus10032990.g ID=Lus10032990.BGIv1.0 annot-version=v1.0 MQLHISPSMRSITISSSGNSSSSNGGFIDLMKIKVAARHISYRTLFHTILILAFLLPFVFILTALVTLEGVNNCSSFDCLGRRLGPRLLGRVDDSGQRLV KDLHKILNQVNTEEIPNGLKLPESFSELVSEMKSNQYDAKTFGLTLRAMMEKFEREIRESKFAELMNKHFAASSIPKGIHCLSLRLTDEYSSNAHARRQL PAPELLPLLSDNSYHHFILSTDNILAASVVVTSTVASSKTPEKIVFHVVTDKKTYAGMHSWFALNPVSPAIIEVKGVHQFDWLTRDNVPVLEAVENHNGI RNYYHGNHVAGANLSDTTPRMFASKLQARSPKYISLLNHLRIYLPELFPNLDKVVFLDDDVVIQRDLSPLWDIDLKGKVNGAVETCKGEDEWVMSKRFKN YFNFSHPLISNNLDPQECAWAYGMNIFDLHKWRETTIRETYHSWLRENLKSNLTMWKLGTLPPALIAFKGHVHAIEPEWHMLGLGYQNKTDIESVTKAAV IHYNGQSKPWLPIGFEHLRPFWTKYVNYSNDFIRNCHIMET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10032990 [exp]	0	1
AT4G21450			PapD-like superfamily protein ...		Lus10018534 [exp]	2.0	0.8403
AT4G21450			PapD-like superfamily protein ...		Lus10039757 [exp]	3.7	0.8449
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10024182 [exp]	14.5	0.8298
AT4G30020			PA-domain containing subtilase...		Lus10006973 [exp]	15.5	0.8167
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10024181 [exp]	15.6	0.8334
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10037795 [exp]	17.0	0.8354
AT1G22610			C2 calcium/lipid-binding plant...		Lus10001538 [exp]	18.0	0.8053
AT5G16720			Protein of unknown function, D...		Lus10004050 [exp]	22.0	0.8220
AT2G02820	MYB	ATMYB88	myb domain protein 88 (.1.2)		Lus10012847 [exp]	25.8	0.7893
AT5G16300			Vps51/Vps67 family (components...		Lus10041337 [exp]	28.3	0.8181

Compare expression of checked genes

Lus10032990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.