Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15390 391 / 5e-136 tRNA/rRNA methyltransferase (SpoU) family protein (.1) AT4G38020 48 / 5e-06 tRNA/rRNA methyltransferase (SpoU) family protein (.1) AT2G19870 48 / 8e-06 tRNA/rRNA methyltransferase (SpoU) family protein (.1) AT4G15520 46 / 1e-05 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012771 [exp] 52 / 2e-07 AT4G15520 348 / 2e-123 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Lus10034004 [exp] 48 / 3e-06 AT4G15520 346 / 1e-122 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G122300 [exp] 433 / 1e-152 AT5G15390 430 / 9e-152 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Potri.008G198200 [exp] 53 / 5e-08 AT4G15520 347 / 9e-123 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0098 [flax] [poplar] SPOUT PF00588 [flax] [poplar] SpoU_methylase SpoU rRNA Methylase family
Representative CDS sequence Show only first row Show all	>Lus10032993 pacid=23160399 polypeptide=Lus10032993 locus=Lus10032993.g ID=Lus10032993.BGIv1.0 annot-version=v1.0 ATGAGAGCGTGCAAAACCCTAGTCCACCATCCTCTCCCTTACCTCCATAACCTAAAACCCTATAACTTTTCCAGTTCCACTGATCTTCCTTGTTTGTACT TCAAATCTCCGTCCCCCTTATCCTCGTCGTCCCGAGCCAAACTCTTTCATCCTTTCCTTACAAGGTCCTCTCACAGTTCTTCGGCAGCGATCTCCTTAGA ATCGGCTAACGATGACGATGATCCTCAAGCCGACCCCAAAAAGGACAACGTCAAGCACTTACTCAGCAATCCAGACGGTATTTCCAGGCTGATGAAGATG GAGAGGCGGAAGAGCATTCCGTTGGTTGTAGAAAAGGCTTGTGAAAGATGGTTTCCTTACTTGGATATGTTTAAATGCGGGAATGGCGCCCAGTTAAGCA GCGGTCAAGTGCTGGAGGCAATGGCTCCGTATATTATGGAGGAAAGGAAAGAGAGATTCAGGAATGCCGTGAATAACAGGAGTTACTCTGTGTGTCTAGT GGTTGAAGGTTTGACCGATTTCGGCAACGTCTCTGCGACTTTTCGTTCTGCTGATGCACTTGGATTTCAGTCTGTTCATGTCATCTCTCGTGATAGCTCG AAAAGGTATAAGGATAATCGCCATGTTAGCATGGGAGCAGAGAAATGGTTGGACATTGAATTGTGGGACACAGCTGAAGAGTGCTTCAAAGTTCTTAAGT CTCGTGGTTATAGAATTGCTACTACGCATGTCGGAATGGACGCGGTGTCTGTTTACGACATGGATTGGTCACGCCCCACTGCAATTGTAGTTGGCAATGA AAAAAGGGGAATAAGTGAGGAGGCACTGGGACTCTCTGATCTTCATTGCAGCATTCCAATGAACGGCATGGTGGACTCTTTCAATGTATCGGTAGCTGCA GGCATAATCATGCACCATGCTGTCTGCGATAGGACGTCACGTCTGGGGCGTCATGGTGATTTATCAGCAGAAGAAAATAAGATACTGCTGGCGGAGTTCT CGTTACGCCATAACATGAATGCAATAAGCATTGTGCATGAGTATGCAAAGAGGCAGACTTACATGCCAATGCCAAAGCTATGA
AA sequence Show only first row Show all	>Lus10032993 pacid=23160399 polypeptide=Lus10032993 locus=Lus10032993.g ID=Lus10032993.BGIv1.0 annot-version=v1.0 MRACKTLVHHPLPYLHNLKPYNFSSSTDLPCLYFKSPSPLSSSSRAKLFHPFLTRSSHSSSAAISLESANDDDDPQADPKKDNVKHLLSNPDGISRLMKM ERRKSIPLVVEKACERWFPYLDMFKCGNGAQLSSGQVLEAMAPYIMEERKERFRNAVNNRSYSVCLVVEGLTDFGNVSATFRSADALGFQSVHVISRDSS KRYKDNRHVSMGAEKWLDIELWDTAEECFKVLKSRGYRIATTHVGMDAVSVYDMDWSRPTAIVVGNEKRGISEEALGLSDLHCSIPMNGMVDSFNVSVAA GIIMHHAVCDRTSRLGRHGDLSAEENKILLAEFSLRHNMNAISIVHEYAKRQTYMPMPKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15390			tRNA/rRNA methyltransferase (S...		Lus10032993 [exp]	0	1
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10003515 [exp]	7.1	0.8024
AT4G03200			catalytics (.1.2)		Lus10003165 [exp]	7.1	0.8192
AT1G31790			Tetratricopeptide repeat (TPR)...		Lus10037288 [exp]	7.6	0.8173
AT5G36170		ATPRFB, HCF109	high chlorophyll fluorescent 1...		Lus10036446 [exp]	9.7	0.8509
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Lus10028399 [exp]	12.4	0.8569
AT5G17790		VAR3	VARIEGATED 3, zinc finger (Ran...		Lus10013630 [exp]	12.7	0.8415
AT3G19490		ATNHD1	ARABIDOPSIS THALIANA NA/H ANTI...		Lus10019820 [exp]	13.3	0.8471
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Lus10009820 [exp]	13.3	0.8059
AT4G29400			Protein of unknown function (D...		Lus10032701 [exp]	13.4	0.8455
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10041392 [exp]	13.4	0.8161

Compare expression of checked genes

Lus10032993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.