Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71840 414 / 3e-144 transducin family protein / WD-40 repeat family protein (.1) AT3G49660 91 / 2e-20 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 88 / 2e-19 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 80 / 4e-16 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT1G11160 78 / 1e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 78 / 2e-15 TAF5 TBP-associated factor 5 (.1) AT1G61210 77 / 4e-15 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G42660 75 / 2e-14 transducin family protein / WD-40 repeat family protein (.1) AT5G08390 72 / 2e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 71 / 3e-13 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033710 [exp] 667 / 0 AT1G71840 489 / 2e-166 transducin family protein / WD-40 repeat family protein (.1) Lus10031629 [exp] 654 / 0 AT1G71840 488 / 2e-172 transducin family protein / WD-40 repeat family protein (.1) Lus10003487 [exp] 91 / 1e-20 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 91 / 3e-20 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 91 / 3e-20 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 90 / 5e-20 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 85 / 1e-17 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021059 [exp] 84 / 2e-17 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10041007 [exp] 81 / 2e-16 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G087200 [exp] 410 / 3e-143 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.013G116900 [exp] 386 / 2e-133 AT1G71840 473 / 6e-167 transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 92 / 4e-21 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 92 / 5e-21 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 88 / 2e-19 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 82 / 1e-16 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 81 / 1e-16 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.008G002300 [exp] 80 / 5e-16 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 78 / 2e-15 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.001G173500 [exp] 75 / 1e-14 AT1G15440 1342 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10032994 pacid=23160337 polypeptide=Lus10032994 locus=Lus10032994.g ID=Lus10032994.BGIv1.0 annot-version=v1.0 ATGAGGGATGGTGATAGCAGCGATGATGGAGAGGTCTACATCGACGAATCAGATACTCTTCATGAGGTTATCCTTGATGATGAAGATCTTCCTGATGTCA ATGATGAGGAAGATGAGCAAGCTGGCTATGATGAGGATGATTCTATGCACACATTCACTGGCCATACATCTGAACTTTATACAGTTGCCTGCAGTCCGAT AGACCCTGTACTGGTAACAACTGGGGGCGGTGATGACAGAGGATTTCTATGGAAGTTAGGACAGGGAGATTGGGCTGCTGAATTTGGAAGCCATAAGGAT TCAGTTACTAGCTTAGCATTTAGTAGCGATGGACAGTTTCTAGCATCTGCAGGCCTTGATTCTGTAGTTAATGTCTGGGATGCATCTGGAAATCTTAAAT TTATTCTTGAAGGCCCCATTGTGGTTGAGCAAACAGAGGAAGAAGCTGATCCTTCTGCTGGCTTTGAGTGGATCAGGTGGCATCCTAGAGGTCACGTAGT GTTGGCTGGTTCAAATGATTGCAGTGCTTGGATGTGGAATGCTGATAGAGGTGCTGTCCTCAATGTATTTTATGGTCATGGTGGACCTGTTACCTGTGGA GATTTCACCCCTGATGGCAAAACTATCTGCACTGGTTCTGCTGATATGACTTTGAGAACATGGAACCCTAGAACTGGGGAGAGCATGCATGTGGTAAGAG GATTAACTTGCTTGACCATTACCTCTGATTCAACTCTTGCTCTTACTGGTGCTTTGGATGGCTCTGTGAAAATTGTTAACATAGTGACAGGAAAGGTGGT CAGTACTTTATCTAGTCATTCAGATTCAGTCTTATGCATATATCTATCAAATTCATCAAGATTTCCTTGGGCGGCAACTGGAGGCAGGGATCAACAACTT GTTATATGGGATCTGGAACATTCAGCTGCTCGCAACATATGCAATCATGAGAGCGAAGTGACATGCTTAACGTGGATAGGCATGTCGAGGTACGTGGCTA CAGGATGTGCAGATGGAGACATAGTGATATGGGATGGTCGATCTGGGGAGAAGTGA
AA sequence Show only first row Show all	>Lus10032994 pacid=23160337 polypeptide=Lus10032994 locus=Lus10032994.g ID=Lus10032994.BGIv1.0 annot-version=v1.0 MRDGDSSDDGEVYIDESDTLHEVILDDEDLPDVNDEEDEQAGYDEDDSMHTFTGHTSELYTVACSPIDPVLVTTGGGDDRGFLWKLGQGDWAAEFGSHKD SVTSLAFSSDGQFLASAGLDSVVNVWDASGNLKFILEGPIVVEQTEEEADPSAGFEWIRWHPRGHVVLAGSNDCSAWMWNADRGAVLNVFYGHGGPVTCG DFTPDGKTICTGSADMTLRTWNPRTGESMHVVRGLTCLTITSDSTLALTGALDGSVKIVNIVTGKVVSTLSSHSDSVLCIYLSNSSRFPWAATGGRDQQL VIWDLEHSAARNICNHESEVTCLTWIGMSRYVATGCADGDIVIWDGRSGEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71840			transducin family protein / WD...		Lus10032994 [exp]	0	1
AT1G01150			Homeodomain-like protein with ...		Lus10026308 [exp]	4.9	0.8538
AT4G12740			HhH-GPD base excision DNA repa...		Lus10043074 [exp]	5.1	0.8670
AT5G66600			Protein of unknown function, D...		Lus10016786 [exp]	16.9	0.8416
AT4G02120			CTP synthase family protein (....		Lus10010020 [exp]	18.9	0.8663
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10018612 [exp]	19.3	0.8575
AT2G34050			unknown protein		Lus10013954 [exp]	27.5	0.8228
					Lus10011527 [exp]	30.4	0.8421
AT1G24880		AtLpxC2	lipid X C2, UDP-3-O-acyl N-ace...		Lus10003708 [exp]	30.6	0.8462
AT5G64730			Transducin/WD40 repeat-like su...		Lus10002090 [exp]	37.5	0.8453
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10033568 [exp]	43.1	0.8423

Compare expression of checked genes

Lus10032994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.