Plant FIBer expression Database

Lus10032995 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G39410 619 / 0 Saccharopine dehydrogenase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G126100
[exp]
669 / 0 AT5G39410 603 / 0.0 Saccharopine dehydrogenase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF03435 Sacchrp_dh_NADP Saccharopine dehydrogenase NADP binding domain
Representative CDS sequence
>Lus10032995 pacid=23160452 polypeptide=Lus10032995 locus=Lus10032995.g ID=Lus10032995.BGIv1.0 annot-version=v1.0
ATGGACACCGGCATCAGTTCATATCCGGCTCCTCCTCCTCCTCCCTATGACATGATAATCCTTGGAGCATCTGGCTTCACGGGCAAATATGTAATAAGGG
AAGCTCTCAAGTTCCTCAATTCTCAATCTTCTCCTCTCAAATCCCTTGCCCTTGCCGGCCGCAATCCTTCCAAACTCTCTCAAGCCCTCAAATGGGCTAC
TGCTTCCCATCCTACTTCTCCTCCTCCTTCCATTCCCATCCTCTCCGCTGACACCACAGATCCTTCTTCCCTTCGCCTCCTCTGCTCCCAGACCAAGCTC
CTCCTCAACTGCGTCGGTCCCTTTCGTCTATATGGCGACCCTGTTGTGGCTGCCTGTGCCCAATCTGGCTGCGATTACTTGGACATATGCGGAGAGCCCG
AGTTTATGGAGAGGATGGAACTCAATTACCACGACCAGGCGCTTCTGAATGGTTCTTTGGTGGTTTCAGCTTGTGGGTTCGATTCTGTTCCTGCTGAATT
GGGTTGGATGTTTAATTCCAAGCAGTGGCGTTCCCCTGCTGTCCCCAACCAAATCGAGGCTTACTTGAGTTTGGAGTCGGAGATTAACATTGTTGGCAAT
TTCGGGACTTACGAATCCGCGGTCTTGGGAGTTGCTAACGTGGATAAATTGATAGAGCTTAGAAGATCCAGACCAAGAAGGCCCAAGCCGACGATTCCTG
GGCCATTTCCTCCCAAAGGACCAATCGTAGATCACCAAAAGGAGTTTGGTCTATGGGCTGTAAAGCTCCCATCAGCTGATTCAGTCGTGGTAAGAAGAAC
ACTTACAACCCTAGCAGAACACCCTCAGGGTCTTTCCAGCGTTAATGAGAGTGGTGACCAGATAGAAAGAAGGGAGAAATTTTGGTCAGAGATGAAGCCT
GCTCATTTTGGGGTGAAGTTGGGATCCAAGAGCTTGCTAGGGGTATTCCGGTTCATTACACTTGGTGTTTTCATTGGCCTGCTTGGTAGGATTTCCCTAG
GGAGGTGGCTACTGCTAAAATTTCCATCAATCTTCAGCCTTGGATGGTTCAAGAAGAAGGGTCCTTCGGAGCACGAGGTTGAAAGTGCGTCATTCAAGAT
GTGGTTTGTTGGCCGTGGATACAGTGACTCGACCGAAGCATCCAAGAAGCAGAAGCCTGATGCTGAAATCATAACAAGGGTAATGGGGCCTGAGATTGGC
TACATCACTACCCCAATTGTGTTGCTCCAATGTGCACTTATTGTGCTTGGGCAACGTGAAAGCCTCCCCAAGGGTGGAGTTCTCACTCCAGGGATTGTAT
TCGGTCCAACTGATCTCCGAGAACGACTCCAGCAAAATGGGATTTCTTTTGATGTCATTTCCAGGAAGAATGTCCCTGCTGCTGATTCTTAA
AA sequence
>Lus10032995 pacid=23160452 polypeptide=Lus10032995 locus=Lus10032995.g ID=Lus10032995.BGIv1.0 annot-version=v1.0
MDTGISSYPAPPPPPYDMIILGASGFTGKYVIREALKFLNSQSSPLKSLALAGRNPSKLSQALKWATASHPTSPPPSIPILSADTTDPSSLRLLCSQTKL
LLNCVGPFRLYGDPVVAACAQSGCDYLDICGEPEFMERMELNYHDQALLNGSLVVSACGFDSVPAELGWMFNSKQWRSPAVPNQIEAYLSLESEINIVGN
FGTYESAVLGVANVDKLIELRRSRPRRPKPTIPGPFPPKGPIVDHQKEFGLWAVKLPSADSVVVRRTLTTLAEHPQGLSSVNESGDQIERREKFWSEMKP
AHFGVKLGSKSLLGVFRFITLGVFIGLLGRISLGRWLLLKFPSIFSLGWFKKKGPSEHEVESASFKMWFVGRGYSDSTEASKKQKPDAEIITRVMGPEIG
YITTPIVLLQCALIVLGQRESLPKGGVLTPGIVFGPTDLRERLQQNGISFDVISRKNVPAADS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G39410 Saccharopine dehydrogenase (.... Lus10032995
[exp]
0 1
AT5G33320 ARAPPT, CUE1 PHOSPHOENOLPYRUVATE/PHOSPHATE ... Lus10002385
[exp]
5.2 0.8172
AT4G02080 ASAR1, ATSARA1C... secretion-associated RAS super... Lus10037739
[exp]
9.5 0.7693
AT1G08280 Glycosyltransferase family 29 ... Lus10019538
[exp]
15.0 0.8167
AT1G74030 ENO1 enolase 1 (.1) Lus10038963
[exp]
23.9 0.8019
AT2G12462 unknown protein Lus10001679
[exp]
24.5 0.7396
AT2G24230 Leucine-rich repeat protein ki... Lus10035826
[exp]
26.1 0.7116
AT3G50660 PSC1, CYP90B1, ... SUPPRESSOR OF NPH4 2, SHADE AV... Lus10041738
[exp]
26.7 0.7036
AT1G29150 RPN6, ATS9 REGULATORY PARTICLE NON-ATPASE... Lus10036805
[exp]
26.8 0.8126
AT1G16300 GAPCP-2 glyceraldehyde-3-phosphate deh... Lus10009602
[exp]
33.1 0.7977
AT2G17980 ATSLY1 Sec1/munc18-like (SM) proteins... Lus10023936
[exp]
33.7 0.7932

Lus10032995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.