Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02210 49 / 2e-06 unknown protein AT2G24960 44 / 8e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023062 [exp] 600 / 0 AT4G02210 67 / 4e-12 unknown protein Lus10011599 [exp] 197 / 5e-64 AT4G02210 54 / 1e-09 unknown protein Lus10018740 [exp] 197 / 6e-64 AT4G02210 58 / 5e-11 unknown protein Lus10034954 [exp] 149 / 2e-43 ND / Lus10008445 [exp] 137 / 8e-41 ND / Lus10010798 [exp] 146 / 4e-40 AT5G27260 61 / 5e-10 unknown protein Lus10004397 [exp] 126 / 1e-33 AT5G27260 77 / 6e-16 unknown protein Lus10022379 [exp] 125 / 2e-33 AT5G27260 74 / 1e-14 unknown protein Lus10032874 [exp] 119 / 3e-31 AT5G27260 53 / 1e-07 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G265900 [exp] 45 / 7e-05 AT2G24960 761 / 0.0 unknown protein Potri.002G200600 [exp] 44 / 8e-05 AT4G02210 471 / 1e-163 unknown protein Potri.005G252500 [exp] 43 / 0.0002 AT4G02210 74 / 9e-15 unknown protein Potri.013G025200 [exp] 42 / 0.0004 AT2G24960 514 / 2e-168 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032996 pacid=23160405 polypeptide=Lus10032996 locus=Lus10032996.g ID=Lus10032996.BGIv1.0 annot-version=v1.0 ATGTCGCGGAAATACTTGACATTGTCCCCTCAAGAAGATCAAGTGCTGTTTGACATTCTGCTAAGCTTGCATGATTCTGGCGACATCCAAAATGGGACCC TAAAGGGGTGTGGCTATAATCAAGTACATAAGAGGTTGAAGCAAATCCTCCCTGACACCAAGCATGATTCGGAATCAATAAAGACCAAGTTTCGTGCCTA CAAAACCAAGTTCAATGCTCAGGTTTGGGATGATGAGAGGGGGTGTTGTACTTGTGACAAGGAGGTTTGGGTGGAATGGGTTAAGGGGCATGCTAATGCT AAAGGACTCTATAATACTAGAATTGCTCATTGGACTGAGTTGTGCAAGATATTTGAGTTTAACCAGGCTGATGGAACTGAAAGCATGACTGCGAATGATG CAGCCAGTGCTCTAGAGGCTGAAATTCGTGCTACTGGTAGTGCACCTTACCCTCCATTTCAGACCTATGCAGATGCTAGCAACCCGATCATGGAAGACTT GATCAATGACGGGTTTGATATGAATGCTGAGGGTTTGAGAGATCTTGCAGAAGAAGCTTCAGCTGACGGTGGAGAGGAGACTGTATCAAGGGCACCAGAG AAAGGCAAGGCCAGTTCATCCGGTACGAAACGTACAAGGGCGAAAGTAGTCGATGAGTACTTAAACGCTATCCAGGTGCAAATAGAATCTATGACTGGCA CCCTAACTACTACGTCGACACAAATCGTCAGGTTAGCAAACAATATGTGTTTGCCGAATGACATTGCGATGAAGAGATCGCGGGTTATTGAAGAGATTTC ACAGCTTCCAGGCATAAGCTACAACCAGCGATTGAAGGCCCATCGCATCTTCATGAATCAACCAGAGGATTTGGAAGCCTTCTTTCAGATGAAGGAAGAT TTCATCCTCAGCATATTGGAGTAA
AA sequence Show only first row Show all	>Lus10032996 pacid=23160405 polypeptide=Lus10032996 locus=Lus10032996.g ID=Lus10032996.BGIv1.0 annot-version=v1.0 MSRKYLTLSPQEDQVLFDILLSLHDSGDIQNGTLKGCGYNQVHKRLKQILPDTKHDSESIKTKFRAYKTKFNAQVWDDERGCCTCDKEVWVEWVKGHANA KGLYNTRIAHWTELCKIFEFNQADGTESMTANDAASALEAEIRATGSAPYPPFQTYADASNPIMEDLINDGFDMNAEGLRDLAEEASADGGEETVSRAPE KGKASSSGTKRTRAKVVDEYLNAIQVQIESMTGTLTTTSTQIVRLANNMCLPNDIAMKRSRVIEEISQLPGISYNQRLKAHRIFMNQPEDLEAFFQMKED FILSILE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02210			unknown protein		Lus10032996 [exp]	0	1
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008919 [exp]	3.3	0.9144
AT2G26490			Transducin/WD40 repeat-like su...		Lus10016289 [exp]	4.7	0.9144
AT5G09360		LAC14	laccase 14 (.1)		Lus10036070 [exp]	5.7	0.9144
AT4G02050		STP7	sugar transporter protein 7 (....		Lus10008372 [exp]	6.6	0.9144
AT1G13560		AAPT1, ATAAPT1	aminoalcoholphosphotransferase...		Lus10002042 [exp]	6.9	0.6942
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10017997 [exp]	7.4	0.9144
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021456 [exp]	8.1	0.9098
AT1G55790			Domain of unknown function (DU...		Lus10032900 [exp]	8.8	0.8991
					Lus10014629 [exp]	9.8	0.8854
					Lus10032804 [exp]	9.9	0.8829

Compare expression of checked genes

Lus10032996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.