Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007787 [exp] 51 / 2e-06 ND / Lus10018794 [exp] 47 / 2e-05 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032997 pacid=23160323 polypeptide=Lus10032997 locus=Lus10032997.g ID=Lus10032997.BGIv1.0 annot-version=v1.0 ATGTCTTCTGGATTACGTATTCAAGATTACGAACGTGTTCTGCCGCACGCATCCTCTGTCAGACGCCATGTCCCCTCTTTTCCACAGGTTGCAAAGGAAG TTTGCTGGTCGGACAACTCAAAGAAAGAGAGAGTGGAGGCAAAGGTTGGTGGTCTCCCATACCTGTCTATGATGAGGGATGTGATAGAGAATCCTGTAAC TGAGTTTGCAACTGGAGATTCTGAGTTTGTTTCAAACAAAAGTGGAAAGAATGTGCCTGAAAGGAGTGTGCGTAAAATGAGTGTGTGTAAAAGGAGTGTG CCAGAAAGGAATGTGTCTGAATACTTCATCAAGTTTGCATTGTCGTTCACTCGTTTGGAAATTGACCACTTGAGTGTTTCTGAGGCTTCTCCTCCTGTGA ATCCACAAGGTCCAGAAGCTGGTAATGTGGGTGAATCTCCATATGCAAATAAGCTGGAAATCAAGAAAGAAAGAAGTCAGAACGACCTAGAAGAAAGAAG AATACGTGATGAAGTTTTGTACAGAGTACAATCTGGAGACCAAGAGCTAACGAGGAAAGAATTCATGACAGTTCACCACATGTCAGACATTTCAAATGTA TTTGTGGATGTTGTTTCTGATTTTTATCTGAGGGCGACTTTGGCAAATAATTTGTTTAAGCGGTGGTTATTCAGTTGTAATATGTTTGTAGGGTTCATGA GTTGGTCTGTGGAGGCAATGATTTCAGGTGATTGTGATGATGATGAAAGTGATATAAATGTGGTTATGCTTGCTATGGAAACAATATGGGAGAAGAAATA TTTCAAAAACATTGACTGGGGGGCTTGTAGTAAGATTATCCCTTTATTTCGAATGGAATGGTCATCCGACATGTTCGATGGCTTCAGATGGACCTTCCAA AAAGGTGTCAATCAGCCTGATAACAAATCATGCGGTGTTTTTTCCAGAAACTTCAGGATGAGTATCATTCCGATGTGTGGGTGTAACCTTCCGGCGAAGA TTTACGCACTCGAGCTTCCACCCGATAAATGTCAGGTCCCCTTTACCAGCTATTTTGGGTGTCGAAAGTCTAATGACGGATGCGGAGCATTCATGTGGTG CAAGGTCAACGATAACAAGGATCCTAACGACGACGATGGAGTTCACGTGTATGACTCCCTCGTCTTAACCAACGTAGAGTTGGATCAGAAGAACAAGAAG TTGCAGGAGAAGAACAAGGACTTGAAGGACTGCATTCAAGGCTTGGAAGACAGGATATTTCGCCTTCAGCTTGACGAGGATGACTTGTTCCTTGACGATG GAGATTGGTAA
AA sequence Show only first row Show all	>Lus10032997 pacid=23160323 polypeptide=Lus10032997 locus=Lus10032997.g ID=Lus10032997.BGIv1.0 annot-version=v1.0 MSSGLRIQDYERVLPHASSVRRHVPSFPQVAKEVCWSDNSKKERVEAKVGGLPYLSMMRDVIENPVTEFATGDSEFVSNKSGKNVPERSVRKMSVCKRSV PERNVSEYFIKFALSFTRLEIDHLSVSEASPPVNPQGPEAGNVGESPYANKLEIKKERSQNDLEERRIRDEVLYRVQSGDQELTRKEFMTVHHMSDISNV FVDVVSDFYLRATLANNLFKRWLFSCNMFVGFMSWSVEAMISGDCDDDESDINVVMLAMETIWEKKYFKNIDWGACSKIIPLFRMEWSSDMFDGFRWTFQ KGVNQPDNKSCGVFSRNFRMSIIPMCGCNLPAKIYALELPPDKCQVPFTSYFGCRKSNDGCGAFMWCKVNDNKDPNDDDGVHVYDSLVLTNVELDQKNKK LQEKNKDLKDCIQGLEDRIFRLQLDEDDLFLDDGDW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10032997 [exp]	0	1
AT4G33355			Bifunctional inhibitor/lipid-t...		Lus10029445 [exp]	6.3	0.6730
AT2G18170		ATMPK7	MAP kinase 7 (.1)		Lus10025986 [exp]	22.6	0.7058
AT1G02790		PGA4	polygalacturonase 4 (.1)		Lus10016823 [exp]	32.6	0.6161
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Lus10027709 [exp]	33.2	0.6054
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Lus10014317 [exp]	72.2	0.6502
					Lus10039535 [exp]	73.9	0.6105
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10005630 [exp]	79.1	0.6320
AT2G30480			unknown protein		Lus10019109 [exp]	153.8	0.6065
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10035648 [exp]	206.5	0.6068
AT4G21550	B3	HSI2-L2, VAL3	VP1/ABI3-like 3 (.1)		Lus10014169 [exp]	232.2	0.5817

Compare expression of checked genes

Lus10032997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.