Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29200 292 / 7e-98 ATCM1, CM1 ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, chorismate mutase 1 (.1) AT1G69370 283 / 6e-95 CM-3, CM3 chorismate mutase 3 (.1) AT5G10870 206 / 4e-65 ATCM2 chorismate mutase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015378 [exp] 489 / 1e-169 AT3G29185 474 / 2e-162 Domain of unknown function (DUF3598) (.1), Domain of unknown function (DUF3598) (.2) Lus10019795 [exp] 305 / 8e-105 AT3G29200 288 / 3e-98 ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, chorismate mutase 1 (.1) Lus10014114 [exp] 202 / 1e-64 AT1G69370 199 / 7e-64 chorismate mutase 3 (.1) Lus10007444 [exp] 189 / 2e-58 AT5G10870 310 / 1e-106 chorismate mutase 2 (.1) Lus10019796 [exp] 77 / 7e-18 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G088700 [exp] 313 / 2e-106 AT3G29200 352 / 2e-121 ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, chorismate mutase 1 (.1) Potri.010G162300 [exp] 276 / 5e-92 AT1G69370 370 / 6e-129 chorismate mutase 3 (.1) Potri.018G019250 [exp] 195 / 8e-61 AT5G10870 303 / 1e-103 chorismate mutase 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032998 pacid=23160391 polypeptide=Lus10032998 locus=Lus10032998.g ID=Lus10032998.BGIv1.0 annot-version=v1.0 ATGGAGTCCCAACTTCTGATGAGAGATTCCCCTTCTCCCGCAATTCATTCTCCTACTACCAAGTTGTTTGTTCCTTTCTGCCGTCTTTCTCCGCTCGGAA CAACCAGGACTTGGTCTAGGCTCCCGCTTCCTTCTTCTTCAAATCTTGCTAAGCGTGTCATCATCCTCTGCGCAAACTCTTCCCCGCCTTCTCCTGCGCT GGAGAAGAAGAAAAGGGTTGACGAAAGTGAAACTTTGACACTAGACAGCGTAAGGCGTTCCTTGATACGTCAAGAAGACAACACCTATAATCCTGATGCT TTCTCCATGGATAATTTTCACGGTTCTCTTGTCGAGTACATGGTTAAAGAAACTGAAAAGCTGCACGCCAAGGTGGGTAGGTACAGAAGTCCTGATGAGC ATCCTTTCTTCCCAGATGATTTACCTGAACCATTGTTGCCACCAATGCAGTATCCCAAGGTGCTACATGATATTGCAGATTCAGTGAATATAAATAGTAC CATCTGGAGCATGTACTTTAACGATCTTCTTCCAAGGCTGGTTAAGGCAGGAGATGATGGAAACTGTGGGTCCACAGCAGTATGCGACACGATCTGCGTC CAGGCTCTGTCCAAGCGAATCCATTATGGAAAATATGTAGCCGAGTCTAAATTTCGTGAGAACCCAAATGAATACAGAGCTGCTATAGAAGCACAAGACA AGGAGGGATTGATGGCCTTGCTGACGTACCCAGAAGTTGAGAAAAAGGTAGAAGAGCGAGTAGAGGTGAAAGCCAGGACATTTGCGCAGGAAGTAACAAT GAAAGAAGGAAATTGTGAATGCGAACCAGTATACAAGATAGACCCAAGCTTGGTTGCTGATCTGTATGGGAAATGGATCATGCCTCTGACCAAGGAAGTT CAAGTTATGTACCTGTTGAGAAGGCTGGATTGA
AA sequence Show only first row Show all	>Lus10032998 pacid=23160391 polypeptide=Lus10032998 locus=Lus10032998.g ID=Lus10032998.BGIv1.0 annot-version=v1.0 MESQLLMRDSPSPAIHSPTTKLFVPFCRLSPLGTTRTWSRLPLPSSSNLAKRVIILCANSSPPSPALEKKKRVDESETLTLDSVRRSLIRQEDNTYNPDA FSMDNFHGSLVEYMVKETEKLHAKVGRYRSPDEHPFFPDDLPEPLLPPMQYPKVLHDIADSVNINSTIWSMYFNDLLPRLVKAGDDGNCGSTAVCDTICV QALSKRIHYGKYVAESKFRENPNEYRAAIEAQDKEGLMALLTYPEVEKKVEERVEVKARTFAQEVTMKEGNCECEPVYKIDPSLVADLYGKWIMPLTKEV QVMYLLRRLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29200		ATCM1, CM1	ARABIDOPSIS THALIANA CHORISMAT...		Lus10032998 [exp]	0	1
AT2G40120			Protein kinase superfamily pro...		Lus10028283 [exp]	1.0	0.9624
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10005390 [exp]	1.4	0.9416
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Lus10014349 [exp]	2.4	0.9321
AT1G18265			Protein of unknown function, D...		Lus10020457 [exp]	3.0	0.9104
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Lus10020506 [exp]	3.5	0.9319
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Lus10012454 [exp]	7.0	0.9209
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10024068 [exp]	7.4	0.9272
AT1G63850			BTB/POZ domain-containing prot...		Lus10024658 [exp]	8.0	0.9169
AT4G27270			Quinone reductase family prote...		Lus10007612 [exp]	8.8	0.8954
AT3G19895			RING/U-box superfamily protein...		Lus10000199 [exp]	10.0	0.8555

Compare expression of checked genes

Lus10032998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.