Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29185 475 / 2e-166 Domain of unknown function (DUF3598) (.1), Domain of unknown function (DUF3598) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015378 [exp] 738 / 0 AT3G29185 474 / 2e-162 Domain of unknown function (DUF3598) (.1), Domain of unknown function (DUF3598) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G120900 [exp] 524 / 0 AT3G29185 518 / 0.0 Domain of unknown function (DUF3598) (.1), Domain of unknown function (DUF3598) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0116 [flax] [poplar] Calycin PF12204 [flax] [poplar] DUF3598 Domain of unknown function (DUF3598)
Representative CDS sequence Show only first row Show all	>Lus10032999 pacid=23160329 polypeptide=Lus10032999 locus=Lus10032999.g ID=Lus10032999.BGIv1.0 annot-version=v1.0 ATGACTAAAGCCCAATCAGCTATGCTTGAGCCTTTGGGTGCTCGGAAGTCATCTCAACTCTCCCTCCACATTGATGCTTTTACTGATAAGATATCCAGGC CACCCCTTGAATTCTCCTCCTCTCCCCACCCATCTTTCACTTCCATGGCTTCTTCTTATTCTGCTTCTGCTTCTGTTACCTTCGCTGTCTCCTTCCTTCC CTTAACTCAATCTCCCACCCTCCCTTCCCGAACCATACTTTCCTCCTCCACCACTTTCCCAACTCGTCGTCTCCGTCTCCGCCGCCCACTTTCGCCTTTA CTCTCCGCTGCCGCAGTTGTTGATGAACCACCTATAGATACCGACTCCAATCCAGAAGATGCCGAATCGAAGGCCGCAAAGACCGAGCCAGAGCCCGAAG AGCCCGAACCCGAGCAGGATCCCATCACAGTCGAAACTCTCCATCGCTTCTTCGACCTCAACGTTGGGAAATGGCGCGGCTCCTTCTACCAATTCAATGG TAATGGGAGGATGATGCAGAAGATCAGCACCAGGCTCTCTGTCAGTACGTATGGAGAAGACGAATTAATCAGCCTCATTCAAACGCTGTACATAAAACAA CCGTCACTCAGCTCCTCGGAGGAGCCAGAATGGGCAGAATACAAGATCAAAGAGACCAACATGTTCACCGTCGACAAATATCAGCAGATCGGATTTTTCT CAGATAAAAGGGCTTTTGCTTTGAGGTACCAGACTGTTGGTATGTTGGAGTACGTGTTGAGGCAAGGTGTCTTGGGGGAAGATGACACAGGCGAAGACTC CCCCAGAAATCTTAAGATTCCTTCTCGTAAGCCTTCCGTTGTATGTGAGAATTGCTTATATTCACAAGAGATAGATAGGCGAGTAAGAGCCTTTCACATT ATGAACCCTGGAGGTCTCTTAGATATGCTTCTTATGTTCGTCGAGGATAGAGACGATGGGAAGCAGCATCCTCCTCCTTCATCACTTGATGCTGATAACA GTGACAGGCTTCAACCATTTCTTGGTAGGTGGGAAGGACGTTCAATAACTAAACGAAGTGGTGTTTATGATTCAACACTTGCTGAAGCTGATAATGTTGT TTTACTTGAGATGAATGAGGAGGGTCAGCTAATCCAGGATATCGCAACGACTACTGATGCAAGTGGCGTGACAACAAATGTGAATTGGACCGGTACCATG GTTGATAACTTGATTGTATTTGATGGAGGGTATCAGACGACTCTGTTGCCTGGAGGGATGTACATGGGATGTCCTTGCGATATTGGGAAGATTGTTGCAG AGTCCAAGTCATTTCATCTGGAGTTTTGCTGGATTGAATCTCCAGGGAAGAGACAAAGACTAGTTAGGACTTATGATGTAGAAGGTTTGGCAGTCTCATC AACATACTTCTTCGAAACTAGAGTATAG
AA sequence Show only first row Show all	>Lus10032999 pacid=23160329 polypeptide=Lus10032999 locus=Lus10032999.g ID=Lus10032999.BGIv1.0 annot-version=v1.0 MTKAQSAMLEPLGARKSSQLSLHIDAFTDKISRPPLEFSSSPHPSFTSMASSYSASASVTFAVSFLPLTQSPTLPSRTILSSSTTFPTRRLRLRRPLSPL LSAAAVVDEPPIDTDSNPEDAESKAAKTEPEPEEPEPEQDPITVETLHRFFDLNVGKWRGSFYQFNGNGRMMQKISTRLSVSTYGEDELISLIQTLYIKQ PSLSSSEEPEWAEYKIKETNMFTVDKYQQIGFFSDKRAFALRYQTVGMLEYVLRQGVLGEDDTGEDSPRNLKIPSRKPSVVCENCLYSQEIDRRVRAFHI MNPGGLLDMLLMFVEDRDDGKQHPPPSSLDADNSDRLQPFLGRWEGRSITKRSGVYDSTLAEADNVVLLEMNEEGQLIQDIATTTDASGVTTNVNWTGTM VDNLIVFDGGYQTTLLPGGMYMGCPCDIGKIVAESKSFHLEFCWIESPGKRQRLVRTYDVEGLAVSSTYFFETRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29185			Domain of unknown function (DU...		Lus10032999 [exp]	0	1
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10002906 [exp]	2.6	0.9398
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Lus10041956 [exp]	5.5	0.9205
AT1G74880		NdhO, NDH-O	NADH dehydrogenase-like comple...		Lus10002095 [exp]	10.0	0.9145
AT1G74880		NdhO, NDH-O	NADH dehydrogenase-like comple...		Lus10000828 [exp]	10.5	0.9205
AT5G38290			Peptidyl-tRNA hydrolase family...		Lus10031327 [exp]	10.6	0.8960
AT2G33180			unknown protein		Lus10011764 [exp]	13.1	0.8494
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Lus10021261 [exp]	13.3	0.8487
AT2G01870			unknown protein		Lus10009946 [exp]	14.1	0.9078
AT2G03420			unknown protein		Lus10036810 [exp]	14.7	0.9103
AT5G13410			FKBP-like peptidyl-prolyl cis-...		Lus10040937 [exp]	14.7	0.9092

Compare expression of checked genes

Lus10032999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.