Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03340 288 / 4e-91 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT1G13960 268 / 2e-83 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT3G01080 227 / 9e-69 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1) AT4G26640 191 / 8e-55 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT4G26440 188 / 8e-53 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT2G38470 184 / 6e-52 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT5G56270 187 / 1e-51 WRKY ATWRKY2, WRKY2, WRKY23 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) AT2G37260 160 / 1e-44 WRKY DSL1, ATWRKY44, TTG2 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) AT2G30250 156 / 1e-42 WRKY ATWRKY25, WRKY25 WRKY DNA-binding protein 25 (.1) AT2G04880 154 / 5e-41 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015377 [exp] 841 / 0 AT2G03340 417 / 3e-141 WRKY DNA-binding protein 3 (.1) Lus10030424 [exp] 258 / 2e-80 AT1G13960 421 / 7e-144 WRKY DNA-binding protein 4 (.1.2) Lus10037131 [exp] 248 / 2e-76 AT2G03340 414 / 1e-141 WRKY DNA-binding protein 3 (.1) Lus10000173 [exp] 233 / 4e-72 AT2G03340 366 / 2e-124 WRKY DNA-binding protein 3 (.1) Lus10036800 [exp] 234 / 2e-71 AT2G03340 405 / 4e-138 WRKY DNA-binding protein 3 (.1) Lus10026634 [exp] 229 / 2e-69 AT1G13960 409 / 1e-139 WRKY DNA-binding protein 4 (.1.2) Lus10016595 [exp] 209 / 9e-61 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10003769 [exp] 206 / 4e-59 AT4G26640 524 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10027139 [exp] 202 / 4e-57 AT5G56270 528 / 1e-179 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G120800 [exp] 483 / 9e-167 AT2G03340 358 / 5e-118 WRKY DNA-binding protein 3 (.1) Potri.017G088300 [exp] 416 / 3e-140 AT1G13960 286 / 9e-90 WRKY DNA-binding protein 4 (.1.2) Potri.010G163000 [exp] 301 / 1e-96 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.008G091900 [exp] 299 / 1e-95 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1) Potri.001G361600 [exp] 206 / 2e-59 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.011G087900 [exp] 201 / 1e-57 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.011G169300 [exp] 201 / 9e-57 AT5G56270 588 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.006G133200 [exp] 194 / 7e-56 AT2G37260 330 / 3e-109 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) Potri.001G472800 [exp] 197 / 3e-55 AT5G56270 585 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.016G128300 [exp] 193 / 1e-54 AT2G38470 377 / 8e-125 WRKY DNA-binding protein 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10033000 pacid=23160437 polypeptide=Lus10033000 locus=Lus10033000.g ID=Lus10033000.BGIv1.0 annot-version=v1.0 ATGGCAGAAAAACGAGATTCTTCTCCTTCGGCGGCGCTCCCTCGCCCTACCATCACTCTTCCTCCTCGCCCTCCCATGGATACTTTCTTCTCCGGCGGCC TCAGCCCCGGTCCCATGACTTTAGTCTCAAGCTTCTTCTCTGATAGCTACCCCGGCGATTCTGACGGCCGTTCCTTCTCCCAGCTTCTCGCCGGCGCTAT GGCTTCTCCGCTTGCTAGGCCCTCTTTCTTCCCCGAGTTTTCCCCTCGCGTCCCTGCTGCTTCTTCTTCCACCGCCTTGTCCTCTACGGAAGATGTTGCT CCTGGAACAACTGGCGGTTTCGGGTTTAAGCAGAGTAGGCCTATGAATTTAGTGGTTCCACGCTCCCCTCTCTTCACAGTTCCACCTGGATTGAGCCCTT CGGGGCTGCTTAATTCTCCTGGCTTCTTTCCACCCCAGAGTCCCTTTGGAATGTCGCACCAACAAGCTTTGGCACAGGTGACAGCACAAGCTGCAATAGC CGCTCAATCTCAAATGTATATGCAAGCCCAATTTCATCCATCTTCAATAGCTGGTTCTGCAGAGGTATTGCCAGTTCAACAATCCTATACTACTGCTGAA GATTCACATTGGCAGATGCCACAGACAACTTCTAATCTTCAAAACACTGTACTGGAGCCTTCTGAATTCTCTCACTCTGAGAAATATCAGCCACTCCCTC CTGCTGTTGATAAACCTAGTGATGATGGTTACAACTGGAGAAAATATGGACATAAGCCAATTAAGGGCAGTGAATATCCAAGGAGCTACTACAAATGCAC ACATCCTAATTGCCCTGTAAAGAAGAAAGTAGAGCGTTCCGGTGATGGCCAAATAACTGAAATCATCTATAAAGGCCAGCATAACCATGAGCTTCCCCAA TCCAATAAGCGTGCAAGGGACAGCAGTGATCAAAATGTGAGCATCAGTTCTCAGTTTAAAACTGAACCTGTTCCACAAGGTCAACCTGGTGATGCAAATA TGCTGCATGAAATAACACCTGCTTATTCAGAGAGTGGTAGGGATCAGGAATCCAGACAAATGGACCCTACAGAACAACCTGCACATAGTAGCTATAGGAG AGCTGAAGATCAGATTGCAAACGAACAAGAAGCGGCTGATAATGCACCAAATTTAAAGAGAAGGCAAACAGATGCTGGAGCATCTGAGGTAGCTTCATCT CACAAAACAGTCACAGACGCAAAAATAATTGTTCAGACTCGAAGTGAAGTTGATCTTTTAGATGATGGCTTTCGGTGGCGGCAGGTGGCTTTAGGTGGCG GAAGGTGCAATGTTCGTAAACATGTGGAAAGAGCCGCAGCTGACCCCAAAGCTGTTATAACAACGTACGAGGGAAAGCACAATCATGACGTCCCTGCTGG AAGAAACAGCAGCCACAACAAGGGGGGGAACACTTACTCCAAGATCCAGAGTATGGTGGCTGACAAACCACAACAGCAGCTTCAATCTTTGGAAGGTATG AACTATGGAAACAATGAGGAGCAAAGACCAGTACTCCTTCGCCTAAAAGAAGAGGAAGTTGTTGTTTAG
AA sequence Show only first row Show all	>Lus10033000 pacid=23160437 polypeptide=Lus10033000 locus=Lus10033000.g ID=Lus10033000.BGIv1.0 annot-version=v1.0 MAEKRDSSPSAALPRPTITLPPRPPMDTFFSGGLSPGPMTLVSSFFSDSYPGDSDGRSFSQLLAGAMASPLARPSFFPEFSPRVPAASSSTALSSTEDVA PGTTGGFGFKQSRPMNLVVPRSPLFTVPPGLSPSGLLNSPGFFPPQSPFGMSHQQALAQVTAQAAIAAQSQMYMQAQFHPSSIAGSAEVLPVQQSYTTAE DSHWQMPQTTSNLQNTVLEPSEFSHSEKYQPLPPAVDKPSDDGYNWRKYGHKPIKGSEYPRSYYKCTHPNCPVKKKVERSGDGQITEIIYKGQHNHELPQ SNKRARDSSDQNVSISSQFKTEPVPQGQPGDANMLHEITPAYSESGRDQESRQMDPTEQPAHSSYRRAEDQIANEQEAADNAPNLKRRQTDAGASEVASS HKTVTDAKIIVQTRSEVDLLDDGFRWRQVALGGGRCNVRKHVERAAADPKAVITTYEGKHNHDVPAGRNSSHNKGGNTYSKIQSMVADKPQQQLQSLEGM NYGNNEEQRPVLLRLKEEEVVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10033000 [exp]	0	1
AT3G26090		ATRGS1, RGS1	REGULATOR OF G-PROTEIN SIGNALI...		Lus10011395 [exp]	1.4	0.9348
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Lus10000818 [exp]	1.4	0.9469
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10006018 [exp]	5.7	0.9247
AT5G54850			unknown protein		Lus10011150 [exp]	6.0	0.9261
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10021909 [exp]	7.4	0.9162
AT5G47790	FHA		SMAD/FHA domain-containing pro...		Lus10003911 [exp]	8.4	0.9126
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10026041 [exp]	8.5	0.9208
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Lus10008491 [exp]	9.5	0.9140
AT3G26090		ATRGS1, RGS1	REGULATOR OF G-PROTEIN SIGNALI...		Lus10006452 [exp]	10.6	0.9048
AT3G21865		PEX22	peroxin 22 (.1)		Lus10015100 [exp]	11.8	0.9185

Compare expression of checked genes

Lus10033000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.