Plant FIBer expression Database

Lus10033002 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G05550 47 / 2e-08 Hypoxia-responsive family protein (.1)
AT5G27760 46 / 5e-08 Hypoxia-responsive family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015191
[exp]
63 / 1e-14 AT3G05550 87 / 3e-24 Hypoxia-responsive family protein (.1)
Lus10020658
[exp]
62 / 2e-14 AT3G05550 94 / 6e-27 Hypoxia-responsive family protein (.1)
Lus10029883
[exp]
64 / 5e-14 AT3G05550 93 / 2e-24 Hypoxia-responsive family protein (.1)
Lus10031490
[exp]
40 / 5e-06 AT3G05550 54 / 2e-11 Hypoxia-responsive family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G056000
[exp]
83 / 1e-22 AT3G05550 58 / 1e-12 Hypoxia-responsive family protein (.1)
Potri.013G015400
[exp]
45 / 9e-08 AT3G05550 102 / 5e-30 Hypoxia-responsive family protein (.1)
Potri.005G024500
[exp]
44 / 2e-07 AT5G27760 102 / 4e-30 Hypoxia-responsive family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04588 HIG_1_N Hypoxia induced protein conserved region
Representative CDS sequence
>Lus10033002 pacid=23160361 polypeptide=Lus10033002 locus=Lus10033002.g ID=Lus10033002.BGIv1.0 annot-version=v1.0
ATGGAAGGAGTTCAAGCATGGGTTTCCAAACACAAGCTCGGCACCATTGGAGGAATATGGGCAGCAGCAGTTGGAGGCTCATTTGCTCTTAATAATAATC
GTTCTGCAAAGACCAGTCTTAGGCTCATTCACGCCAGGATGCACGCACAGGCTATAACATTGGCAGTGCTATCTGGAGCAGCTATCTACCATCACTTTTA
TGATCATCATCATCACTCTGCTTCTGCTGCTCGTCCTTGA
AA sequence
>Lus10033002 pacid=23160361 polypeptide=Lus10033002 locus=Lus10033002.g ID=Lus10033002.BGIv1.0 annot-version=v1.0
MEGVQAWVSKHKLGTIGGIWAAAVGGSFALNNNRSAKTSLRLIHARMHAQAITLAVLSGAAIYHHFYDHHHHSASAARP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G05550 Hypoxia-responsive family prot... Lus10033002
[exp]
0 1
AT5G25940 early nodulin-related (.1) Lus10030052
[exp]
3.5 0.9732
AT5G51105 Protein of unknown function (D... Lus10019552
[exp]
5.4 0.9330
AT3G54320 AP2_ERF ATWRI1, ASML1, ... WRINKLED 1, WRINKLED, ACTIVATO... Lus10036719
[exp]
5.7 0.9312
AT5G56970 ATCKX3, CKX3 cytokinin oxidase 3 (.1) Lus10031188
[exp]
5.7 0.9545
AT3G50390 Transducin/WD40 repeat-like su... Lus10016779
[exp]
7.5 0.9658
AT3G48660 Protein of unknown function (D... Lus10003120
[exp]
8.8 0.9642
Lus10002596
[exp]
10.8 0.9641
AT3G23730 XTH16 xyloglucan endotransglucosylas... Lus10010936
[exp]
12.0 0.9483
AT3G10920 MSD1, MEE33, AT... MATERNAL EFFECT EMBRYO ARREST ... Lus10030534
[exp]
12.2 0.9608
AT3G09950 unknown protein Lus10039065
[exp]
13.3 0.9169

Lus10033002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.