Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15290 183 / 5e-59 CASP5 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) AT1G14160 150 / 5e-46 Uncharacterised protein family (UPF0497) (.1) AT2G36100 142 / 6e-43 CASP1 Casparian strip membrane domain protein 1, Uncharacterised protein family (UPF0497) (.1) AT2G27370 127 / 7e-37 CASP3 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) AT5G06200 123 / 2e-35 CASP4 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) AT3G11550 120 / 2e-34 CASP2 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) AT1G03700 71 / 1e-15 Uncharacterised protein family (UPF0497) (.1) AT5G44550 67 / 5e-14 Uncharacterised protein family (UPF0497) (.1) AT4G03540 66 / 9e-14 Uncharacterised protein family (UPF0497) (.1) AT3G06390 65 / 3e-13 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015375 [exp] 294 / 4e-103 AT5G15290 219 / 1e-73 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Lus10037160 [exp] 163 / 4e-51 AT1G14160 214 / 9e-71 Uncharacterised protein family (UPF0497) (.1) Lus10029409 [exp] 138 / 2e-41 AT3G11550 234 / 9e-79 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10004205 [exp] 135 / 6e-40 AT3G11550 232 / 8e-78 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10021333 [exp] 132 / 7e-39 AT3G11550 246 / 1e-83 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10017009 [exp] 131 / 3e-35 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017008 [exp] 111 / 2e-30 AT2G27370 228 / 5e-76 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) Lus10021332 [exp] 106 / 1e-28 AT2G36100 229 / 1e-76 Casparian strip membrane domain protein 1, Uncharacterised protein family (UPF0497) (.1) Lus10036770 [exp] 87 / 7e-22 AT1G14160 119 / 2e-34 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G032300 [exp] 226 / 2e-76 AT5G15290 207 / 1e-68 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Potri.008G088700 [exp] 161 / 1e-50 AT1G14160 163 / 3e-51 Uncharacterised protein family (UPF0497) (.1) Potri.009G160000 [exp] 129 / 3e-37 AT2G27370 146 / 2e-43 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) Potri.016G075400 [exp] 120 / 2e-34 AT5G06200 179 / 2e-57 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.006G208800 [exp] 120 / 2e-34 AT5G06200 201 / 7e-66 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.016G075300 [exp] 114 / 6e-32 AT5G06200 162 / 2e-50 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.013G131700 [exp] 72 / 2e-15 AT1G03700 159 / 9e-50 Uncharacterised protein family (UPF0497) (.1) Potri.019G100300 [exp] 67 / 2e-14 AT1G03700 150 / 6e-47 Uncharacterised protein family (UPF0497) (.1) Potri.004G043300 [exp] 62 / 2e-12 AT4G03540 103 / 2e-28 Uncharacterised protein family (UPF0497) (.1) Potri.011G052100 [exp] 54 / 2e-09 AT4G03540 100 / 2e-27 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10033007 pacid=23160377 polypeptide=Lus10033007 locus=Lus10033007.g ID=Lus10033007.BGIv1.0 annot-version=v1.0 ATGGCAGTTGGTGCAGTTGAACTTGGTGAGGCAAAGGGTTTTTCACCCTCAAAGTCTGGCGTGAAAAGAGGGGCTGCCTCCCTAGACTTCATTTTGCGAC TTGTTGGCTTCATTGGCACACTCGGGAGTGCTATTATGATGGCCACAACTAACGAAACACTTCCTTTCGTCACTCAGTTCATCCGTTTCAGAGCCGAATA CAACGATCTTCCAACATTCACGTATTTTGTGGTTGCCAATGGTGTCGTCAGCGCCTATCTACTTCTGTCACTCCCACTTTCAATCTTCCACATTCTGAGG AGCACTGCAAAGAACAGTAGAATCGTTTTACTGATTTTTGACACAGTGGCTCTGGCTTTATTAACAGCCGGATCTTCAGCTGCTGCGGCTATAGTGTACT TGGCACACAAAGGGAACAACAAGGCAAACTGGCTTGCCATCTGCCAGCAGTTCAACTCCTTCTGCGAGCGCATCTCGGGATCCTTGATTGGATCTTATGT GGGAGTCACTGTCTTCATATTGCTCATAGTGCTGTCCGCTTCAGCCCTTTCCCGCCCCTGA
AA sequence Show only first row Show all	>Lus10033007 pacid=23160377 polypeptide=Lus10033007 locus=Lus10033007.g ID=Lus10033007.BGIv1.0 annot-version=v1.0 MAVGAVELGEAKGFSPSKSGVKRGAASLDFILRLVGFIGTLGSAIMMATTNETLPFVTQFIRFRAEYNDLPTFTYFVVANGVVSAYLLLSLPLSIFHILR STAKNSRIVLLIFDTVALALLTAGSSAAAAIVYLAHKGNNKANWLAICQQFNSFCERISGSLIGSYVGVTVFILLIVLSASALSRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15290		CASP5	Casparian strip membrane domai...		Lus10033007 [exp]	0	1
AT5G15290		CASP5	Casparian strip membrane domai...		Lus10015375 [exp]	2.0	0.9321
AT2G36100		CASP1	Casparian strip membrane domai...		Lus10021332 [exp]	4.2	0.9163
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10020080 [exp]	5.9	0.8557
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10009513 [exp]	6.6	0.8578
AT2G27920		SCPL51	serine carboxypeptidase-like 5...		Lus10035555 [exp]	7.5	0.8483
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10004205 [exp]	10.7	0.8720
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029331 [exp]	14.1	0.8450
AT3G14470			NB-ARC domain-containing disea...		Lus10040208 [exp]	14.8	0.6968
AT4G34800			SAUR-like auxin-responsive pro...		Lus10012182 [exp]	15.7	0.8535
AT4G35210			Arabidopsis protein of unknown...		Lus10025122 [exp]	19.7	0.8445

Compare expression of checked genes

Lus10033007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.