Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15280 842 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61990 147 / 1e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 140 / 7e-34 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 140 / 1e-33 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55840 137 / 2e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 132 / 4e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31850 130 / 2e-30 PGR3 proton gradient regulation 3 (.1) AT3G22470 126 / 1e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 126 / 1e-29 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62670 125 / 2e-29 RPF2 rna processing factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015373 [exp] 331 / 2e-103 AT5G15280 126 / 6e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 150 / 2e-36 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10036020 [exp] 147 / 9e-36 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012037 [exp] 146 / 9e-36 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 140 / 9e-34 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012139 [exp] 140 / 2e-33 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 139 / 5e-33 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026206 [exp] 139 / 7e-33 AT5G14770 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010410 [exp] 134 / 1e-31 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G086000 [exp] 1189 / 0 AT5G15280 984 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G105400 [exp] 168 / 4e-42 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G368700 [exp] 165 / 4e-41 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 145 / 1e-35 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G043101 [exp] 144 / 2e-34 AT5G14770 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G276500 [exp] 142 / 2e-34 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271200 [exp] 140 / 3e-34 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G147700 [exp] 140 / 3e-34 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 141 / 7e-34 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G124900 [exp] 135 / 4e-32 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10033008 pacid=23160322 polypeptide=Lus10033008 locus=Lus10033008.g ID=Lus10033008.BGIv1.0 annot-version=v1.0 ATGCTCCAGATTATTTGCAGCCGCAAAAACAACAAACTCACAAAACCCCAACAATTCTCAGTTCTTCTTCAGTATTTCGTCTCTGTCAAATCCCACTTCT CTGTCTTCACTGCATCATCTCCGCTCTCGGACAGATCCCGCCATCAGCAAACCTTGTCCGGTATAAACTTTGTTGGCATTGCGCAATCAGTTATCAACAA GCCTTCTGATTTCTTTCCCATCAGTGAAGGTAAAGTTCACAACTTCCTTACTCACGATGCTACTCTTAACCGCTTGCTCTGGGATATCTCTGATATAATA CCTGATGTTACTCGGAGGTGTAGGAGATTGTCGAGTTTGCAACCCCATGACGTGCTTGAAATATTGTTGGGTTTTCAATTTGAATCCCGGAGAATTGTTA TCCAAGGGGAAAAGGTTAAGTCTTTGTGGATGGTTTTCAATTGGGCTACTACGCAGGGTAAAGAGTTTAAGCATTTGCCCAAATCATGTGAGGTTATGGC ATCGTTACTCCTTCAGTCTAGAATGCTTACAGAAGTCCAGTTGCTGGTTCTGGAAATGGAGAGACAGGGGATTAAGTTCGATGGGAATGTGATATATGAT GGGTTGATTAGATGTTATGTTGAAGCTAGTGATTCAGATAGAGCTAGTTTGGTATATGAGAGAATGTGTGAGCAGGGATTGGTGCCATCACCACTTTGTT ACCATGGTCTTTTGGATCTTTTGGTGAGAATGAAAAGAACTGAACTCGCTTTTCAGGTGTGTCGTGACATGGCTAAAATTGGTTTTAGTCTGACTAATGG GATGAATGCTAGCATGGATAATGTAGGTAGATTGCTTTGTGTGAATGGAATGATTAAAGAAGCAAGGAGGCTTGTGAAGAAGGCCATGGCTCTAGGTTTC GAGCCTAGTAGTTTCCTTGTTGATGAGATTGCTTGGGGCTATTGTGCTAAATATGACTATGAAGATGCTCTCAAGTTCTTGGCTGAGATGAAGTATGCAC CAAGTGTTCTAGCAGGTAAAAAGATTATATGGAGCATATGCCTTAATTTTGATGTTGAGAGTGCAAATTCGTTCAGGCATAAAATTGAATGCCTGGGTTT TAGGTCGGATAAGATGACTTTTGGTATTTTGATTAGTCAATCCTGCAAGGAGGGAAATTTAAGGAACGCTTTTGTGTATCTGTCTGAGATGGTTGCGAGG GGTTTGAAACCTGACGTTTGGACATACAATGCTCTTATTGCTGGTGTTCTAAAGGAGGGCATATGGGACCAAGCCCGTGTTATTGTGGATGAGATGATAG ATGATGGAGTGACTCCCAGATTATCAACTTTCAGAGTTCTCCTTGCAGGCTACTTTAAAGTCAGAAAGTTTGAAGAAGCTAAGTCAGTCATTTTTGAGAT GGGAAGGCTTGGTTTGTTTGACACATCTTCTATTGTGGAGCCACTATCTAAAGCATTTGCTATCTTAGGGTTCAACCCAACCACTGTGAGGTTTAAGCGT GACAGTGGAAGAAGTTTAGTGAAGAAAGAGTTCTCTGACCATCTTGGAAATGGACTGTATATGGATACAGACATTGAGGAGTTCGAATACAAAGTAAGCC AAGTTATTGAAGATTCATTAATGCCTGATTTTAATCTGCTTCTAAAAAAGGAATGTGATTCTGGAAACTTCAAAGGTGCTTTCTCAATTGTAGATAAAAT GGTTCAATGGGGTCAAGAGCCAACCGTAGATGTGTTTGCAACAATGGTGAAGGGTCTTTGTGGATCTCGATCCGAAATAAGATTGTGCAACCTCCTCATT GAGAAAATCCCAAGATTTTTAAGTCTGCTCGATCAAGAAGTTCTCAATTGTCTTGTTCAAGCCTATTGCAAAATATCACTGGCAGACACAGGAAGGATAA TCGTTCTTCATATGATTCAAAGAAATATGATGATTGACAATGCAACGTTTACTGCTCTGATTACTGCACTATGCAAAAAGGGAAATTTGTCTGTGCTGCA TGAGTGCTGGGACAGTGCTTGGAATAGCAATTGGTTGCCACAGTTGGAGAACTGTAAGCATCTTCTAGACGGTATTTGCTCCCGTGGAATGCTGAAGGAA TTATTGGAGCTTCTCGAACGCATGTTGGTTTTCCATCCTAACTCAAGGCGAGAAGTTTGTCATATGTTCCTGGAAAAGCTCTCGAGTACTGGCTTTGCAT CCGTTGCTTGTTTATTGCTGGAAGAATTTGAAAAACATGGGTTCGGTATGGATGGAAGTACTTACAGCCATATTGTAGCTGGTTTATGGAAAGAGCGGAA ATATGTAGATGCCTACAAACTTTTTAGCAACGTTCTGGCTAGAAGTTTGGTTCTATGCTTGGATGTTTCTGTTATTATTATTCCTCATCTTTGTAAGGTT AGTGTTGAGATGGCTGATGTGCTGGAAGGGACCAAACTTAGAGAAGATTCTTCATCTTCGTTTTCGATCATTAGTGCTCTACATAGGAGATTTGGTGGGA CAGGAAATGTTGAAGAAGCAGCCAGTTTGCTCCAGGGTATGTTGTCAAAAGGGCTACTTGTGGATGCTGAAATATGTGAAATGCTTTTCCAGGGGTATTG CAAAGCAAGTAACTTGGGCAAAGCCAAAGAGATGCTTTGTGTCCTGATGCGGAAAGGCTTACTCCTTTCAATATTAAGTTACCGGAGCTGGGTTCGTTTA GTGTGTAGCGAGCGTGGATTCAATATGGCATTAAACCTGAAAGACCTGATGGTAAGAGAAACTGAGTGTGATCGACTTGTCATTTACAATATCCTAGTTT TCAGTCTGCTTAGAGCAGGAAACAGGTTTCTTACAAGGAGGATTCTGAATGAAATGGAGGCAAAAGGATTAGAATTCAATGACGTTACTTATAACTTTCT TATATATGGATTCTCCAAATGCAAAGATGCTTCCAATTCTCTCTACTATCTGTCTGCTATGGTTTCAATGGGTCAAAGGCCAAGCACCAGCAGCTTGAGA AGTCTAGTTTCATGTCTTCTACTTGAGCAAGATAATTTTAGCAAGGTGTTGGAGTTGAGTAGAGAAATGGAATCGAGAGGTTGGGTTCACGATTCCATCC TTCAAAATGCAGTTGCAGAGCATTTTTTTTGTCAAAATAAGATCCAAGACGCGGAGAGTTTCCTGAATAGGATTGTGGAGAAAGGTTTAATACCAGATAG AATCAATTATGACGGCCTAATTAAAAGGTTCTGTTGGTATGGAAGAACAACTACTGCTGTTGATCTTCTGAACACAATGTTGAAGAAAAGGAACCTACCA AACTGCGGGAGCTACGACTGCATAATCCAAAGTCTCTGCAGATGCAATCAAGTGAAGGAAGCTCTGTATTTCCATTCCGAGTTGTTGGACATTAACGGTA AGCCAAGTATGAAAACATGGAGTGTGCTGATTTGGAAGCTATGCCAACAAGGACGGCCTGCAGAAGCAGAAGAGCTTCTCCATGGGATGATTGCAGCCGG TGAAGTCCCTGGAAGGGAGCTATACAGTTGCGTAATTGATGGGTACCGTGCAGAGAACAATGTGAGAAAGTCTTCAGAAGTGATGACAAGGATGCAGGAA AGTGGGCATAAACCAGATTTTGAGGCTCACTGGTCTCTTATAAGCAATTTGAGCAGTTCCGTGGCGAAAGAGAATAAGAAATCAGGTGGAGGTTTCTTAT CAGGGCTTCTTTCTGGGAGTGGACATCAAGTCAGAAGGGATCCCAAGATTAAACCGTTGTAA
AA sequence Show only first row Show all	>Lus10033008 pacid=23160322 polypeptide=Lus10033008 locus=Lus10033008.g ID=Lus10033008.BGIv1.0 annot-version=v1.0 MLQIICSRKNNKLTKPQQFSVLLQYFVSVKSHFSVFTASSPLSDRSRHQQTLSGINFVGIAQSVINKPSDFFPISEGKVHNFLTHDATLNRLLWDISDII PDVTRRCRRLSSLQPHDVLEILLGFQFESRRIVIQGEKVKSLWMVFNWATTQGKEFKHLPKSCEVMASLLLQSRMLTEVQLLVLEMERQGIKFDGNVIYD GLIRCYVEASDSDRASLVYERMCEQGLVPSPLCYHGLLDLLVRMKRTELAFQVCRDMAKIGFSLTNGMNASMDNVGRLLCVNGMIKEARRLVKKAMALGF EPSSFLVDEIAWGYCAKYDYEDALKFLAEMKYAPSVLAGKKIIWSICLNFDVESANSFRHKIECLGFRSDKMTFGILISQSCKEGNLRNAFVYLSEMVAR GLKPDVWTYNALIAGVLKEGIWDQARVIVDEMIDDGVTPRLSTFRVLLAGYFKVRKFEEAKSVIFEMGRLGLFDTSSIVEPLSKAFAILGFNPTTVRFKR DSGRSLVKKEFSDHLGNGLYMDTDIEEFEYKVSQVIEDSLMPDFNLLLKKECDSGNFKGAFSIVDKMVQWGQEPTVDVFATMVKGLCGSRSEIRLCNLLI EKIPRFLSLLDQEVLNCLVQAYCKISLADTGRIIVLHMIQRNMMIDNATFTALITALCKKGNLSVLHECWDSAWNSNWLPQLENCKHLLDGICSRGMLKE LLELLERMLVFHPNSRREVCHMFLEKLSSTGFASVACLLLEEFEKHGFGMDGSTYSHIVAGLWKERKYVDAYKLFSNVLARSLVLCLDVSVIIIPHLCKV SVEMADVLEGTKLREDSSSSFSIISALHRRFGGTGNVEEAASLLQGMLSKGLLVDAEICEMLFQGYCKASNLGKAKEMLCVLMRKGLLLSILSYRSWVRL VCSERGFNMALNLKDLMVRETECDRLVIYNILVFSLLRAGNRFLTRRILNEMEAKGLEFNDVTYNFLIYGFSKCKDASNSLYYLSAMVSMGQRPSTSSLR SLVSCLLLEQDNFSKVLELSREMESRGWVHDSILQNAVAEHFFCQNKIQDAESFLNRIVEKGLIPDRINYDGLIKRFCWYGRTTTAVDLLNTMLKKRNLP NCGSYDCIIQSLCRCNQVKEALYFHSELLDINGKPSMKTWSVLIWKLCQQGRPAEAEELLHGMIAAGEVPGRELYSCVIDGYRAENNVRKSSEVMTRMQE SGHKPDFEAHWSLISNLSSSVAKENKKSGGGFLSGLLSGSGHQVRRDPKIKPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15280			Pentatricopeptide repeat (PPR)...		Lus10033008 [exp]	0	1
AT5G04670			Enhancer of polycomb-like tran...		Lus10008985 [exp]	1.4	0.9079
AT3G12940			2-oxoglutarate (2OG) and Fe(II...		Lus10027382 [exp]	2.0	0.8457
AT5G18950			Tetratricopeptide repeat (TPR)...		Lus10024666 [exp]	3.5	0.8422
AT3G13682		LDL2	LSD1-like2 (.1)		Lus10038587 [exp]	3.9	0.8786
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10030549 [exp]	6.3	0.8403
AT3G14470			NB-ARC domain-containing disea...		Lus10039540 [exp]	6.5	0.8414
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10036515 [exp]	6.8	0.8800
AT1G12530			unknown protein		Lus10007047 [exp]	7.5	0.8146
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10040634 [exp]	8.9	0.8339
AT1G09870			histidine acid phosphatase fam...		Lus10040951 [exp]	9.5	0.8353

Compare expression of checked genes

Lus10033008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.