Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29030 331 / 2e-115 ATEXP5, ATHEXPALPHA1.4, ATEXPA5 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1) AT2G03090 310 / 4e-107 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT1G69530 305 / 3e-105 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT1G26770 295 / 4e-101 ATHEXPALPHA1.1, AT-EXP10, ATEXP10, ATEXPA10 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) AT5G56320 294 / 7e-101 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT2G40610 290 / 6e-99 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT5G02260 282 / 5e-96 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT2G39700 276 / 7e-94 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT2G37640 273 / 3e-92 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT5G05290 270 / 3e-91 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036763 [exp] 318 / 3e-110 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10037164 [exp] 318 / 3e-110 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10026614 [exp] 308 / 3e-106 AT1G69530 431 / 7e-155 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10034227 [exp] 300 / 4e-103 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10008603 [exp] 285 / 7e-97 AT2G40610 397 / 2e-141 expansin A8 (.1) Lus10042214 [exp] 280 / 5e-95 AT2G40610 393 / 7e-140 expansin A8 (.1) Lus10029038 [exp] 279 / 1e-94 AT2G40610 418 / 6e-150 expansin A8 (.1) Lus10040286 [exp] 278 / 3e-94 AT2G39700 447 / 4e-161 expansin A4 (.1) Lus10009917 [exp] 276 / 8e-94 AT2G40610 395 / 9e-141 expansin A8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G123200 [exp] 336 / 3e-117 AT1G69530 334 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.017G085300 [exp] 332 / 8e-116 AT1G26770 355 / 5e-125 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) Potri.010G167200 [exp] 320 / 6e-111 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.008G088300 [exp] 318 / 5e-110 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.001G001100 [exp] 305 / 4e-105 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.013G060800 [exp] 302 / 3e-104 AT2G03090 356 / 1e-125 EXPANSIN 15, expansin A15 (.1) Potri.019G057500 [exp] 291 / 2e-99 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.006G108000 [exp] 286 / 1e-97 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.016G135200 [exp] 283 / 3e-96 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.008G057100 [exp] 280 / 3e-95 AT2G39700 459 / 6e-166 expansin A4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10033011 pacid=23160344 polypeptide=Lus10033011 locus=Lus10033011.g ID=Lus10033011.BGIv1.0 annot-version=v1.0 ATGGCAGCAGATAATCACCACTTGTGTCTCCTCGAAGCTGTCGTCATTCTTGTTTGTTTGGAAGTTGTTGTTGTAGCATCAGCTTATGGGCGGTACCACC ATGGAGGAGGAGGAAGAGGCGGTCCTTGGATCAACGCCCATGCCACTTTCTACGGCGGCGGTGATGCCTCTGGCACAATGGGTGGAGCGTGCGGATATGG GAACTTGTACAGTCAAGGGTACGGAGTAAACACGGCGGCACTAAGCACAGCATTGTTTAACAACGGGCTAAGCTGCGGATCTTGCTACCAGATAATGTGT GCGAATGACCCACAGTGGTGCATCCGTGGCTCATCAATCTTTGTCACCGCCACTAACTTCTGCCCACCTGGAGGATGGTGTGACCCTCCAAATCACCACT TCGATCTCTCACAGCCCATCTTCCAGCGCATTGCCCAGTACAAGGCTGGCGTTGTCCCTGTCCTCTACCGAAGGGTGAGGTGCATGAGAAGAGGGGGGAT AAGGTTCACAATAAACGGCCATTCGTATTTCAACTTGGTGCTGATAACCAACGTGGGAGGAGCTGGGGACGTCCATTCGGTGGCGATAAAAGGTTCAAGG AGTAGTGGATGGCAGCCAATGTCAAGGAATTGGGGACAGAACTGGCAGAGCAATTCCTATCTCAACGGACAATCACTCTCTTTCTTAGTAACTACTGGTG ATGGTCGATCTCTAGTTTCCTACAACATTGCTCCTTCATCTTGGTCCTTCGGCCAGACTTATACCGGTAGGCAGTTCAGGTACTGA
AA sequence Show only first row Show all	>Lus10033011 pacid=23160344 polypeptide=Lus10033011 locus=Lus10033011.g ID=Lus10033011.BGIv1.0 annot-version=v1.0 MAADNHHLCLLEAVVILVCLEVVVVASAYGRYHHGGGGRGGPWINAHATFYGGGDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCYQIMC ANDPQWCIRGSSIFVTATNFCPPGGWCDPPNHHFDLSQPIFQRIAQYKAGVVPVLYRRVRCMRRGGIRFTINGHSYFNLVLITNVGGAGDVHSVAIKGSR SSGWQPMSRNWGQNWQSNSYLNGQSLSFLVTTGDGRSLVSYNIAPSSWSFGQTYTGRQFRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29030		ATEXP5, ATHEXPA...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10033011 [exp]	0	1
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10034540 [exp]	1.0	0.9304
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007658 [exp]	2.0	0.9011
AT1G74160			unknown protein		Lus10021148 [exp]	3.9	0.8975
AT4G38840			SAUR-like auxin-responsive pro...		Lus10010714 [exp]	4.9	0.8925
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10042122 [exp]	5.0	0.8318
AT4G34770			SAUR-like auxin-responsive pro...		Lus10025909 [exp]	5.0	0.8872
AT5G62360			Plant invertase/pectin methyle...		Lus10031717 [exp]	6.0	0.8770
AT4G38840			SAUR-like auxin-responsive pro...		Lus10025911 [exp]	6.9	0.8648
AT5G18050			SAUR-like auxin-responsive pro...		Lus10008994 [exp]	9.2	0.8683
					Lus10038294 [exp]	9.9	0.8527

Compare expression of checked genes

Lus10033011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.