Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67960 187 / 9e-53 POD1 POLLEN DEFECTIVE IN GUIDANCE 1, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015372 [exp] 499 / 2e-173 AT1G67960 655 / 0.0 POLLEN DEFECTIVE IN GUIDANCE 1, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G103400 [exp] 236 / 1e-71 AT1G67960 640 / 0.0 POLLEN DEFECTIVE IN GUIDANCE 1, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05346 [flax] [poplar] DUF747 Eukaryotic membrane protein family
Representative CDS sequence Show only first row Show all	>Lus10033013 pacid=23160415 polypeptide=Lus10033013 locus=Lus10033013.g ID=Lus10033013.BGIv1.0 annot-version=v1.0 ATGGCGTTGAGATCCTCCGGTAAAAAACTATCCTTTGAGATCCTCAGCGAAAGCAGCTCTTTGGAGGAAGACCAATTTCTACTCCTCACCCAATCAAGCC CCGATACCGTAAAATTGAATCCGACGACGAATAACATTTCGAAAAATCAGAAAAAGAAGAAGAAGAAGAACAAGATCAAACACAAGAAATCCAGCCCCCA CGCCACAATCATCGAAGATCCGTCTGCTGCGACAAGCATCGCCGGTTCCACATCCAATTCCAATTCCAATTCCAATTCGGTGATCGATTCTCCAGTCTCC GGGACTGGAGAATTCCAAAATGGAGCTGCATCGTTTGTTGAGGATAGGTTTAGTAGTTACGGCGGCGGAAGAGGAGGAGGAAGCGTGGTTTTCACATCGA TTCCACTCACCGATGTTGTGTGTGTGTACGACGACTCTATCAGCAAAAATGACAACAACAATGGCGAGTTGAGGCAGAGAAATGTGAGTTTTGGCGGCAC TGTCGACGACGGGGAACCAGATTATGAGAAGCAGGCTTCTGTATTGCGGGTGAATGGAGAAGATGCGGTGGAGGACGATCTGGGAGTCAATTCTGCTGCA GAGAAGCAGCAGAATATGCCGAATGGCTGTGGTCTTCCTAGAAGATTGGAGACTGTGGAGTCACTCGATTGGAAGCAACTCATGGCCGATGATCCTACTT TGGAGAAGTCGCCAGTTACATACTTGATGGATGAAATTGATGAAGGGAATTCATTAAGGCGAACCACTACTCTTGGTAGTGAGAAAGAAAGGGAGAGGGT GTACGACACTATATTCCGCTTACCATGGAGATGTGAGCTACTTATTGATGTTGGCTTCTTCGTGTGTTTGGATTCCTTCCTCTCATTGTTGACGGTCATG CCAGCAAGAATCCTGATGACTGTTTGGAAGCTTCTCACAAGGCAGTTCAAGAAGCCCTCTGCTGCAGAGTTGTCAGATTTTGGCTGCTTTATTGTGTTAG CTTCTGGAGTCATTCTTTTGGAACAAACAGGTCAGCGAACTAGCTATACTCTGAAGATTCAGTCCGCGGACAAAGACAAAATCCTCAGTTTTATACCTCT TGCACCGGCATGCGTGGTCATCCGAGTCGTTACTCCTGTATATGCTGCTCACCTTCCGTACAGTCCACTCCCTTGGAGGATCTTCTGGATATTCCTATTA TCGTCTATGACCTTTGTGATGCTCATGAGCTTGAAGATAATGATCGGTATGGGACTGCAAAAGCATGCCTCGTGGTATGTAAACAGGTGTCGCAAACGGA AACACCATCTTCACTCTGATTAA
AA sequence Show only first row Show all	>Lus10033013 pacid=23160415 polypeptide=Lus10033013 locus=Lus10033013.g ID=Lus10033013.BGIv1.0 annot-version=v1.0 MALRSSGKKLSFEILSESSSLEEDQFLLLTQSSPDTVKLNPTTNNISKNQKKKKKKNKIKHKKSSPHATIIEDPSAATSIAGSTSNSNSNSNSVIDSPVS GTGEFQNGAASFVEDRFSSYGGGRGGGSVVFTSIPLTDVVCVYDDSISKNDNNNGELRQRNVSFGGTVDDGEPDYEKQASVLRVNGEDAVEDDLGVNSAA EKQQNMPNGCGLPRRLETVESLDWKQLMADDPTLEKSPVTYLMDEIDEGNSLRRTTTLGSEKERERVYDTIFRLPWRCELLIDVGFFVCLDSFLSLLTVM PARILMTVWKLLTRQFKKPSAAELSDFGCFIVLASGVILLEQTGQRTSYTLKIQSADKDKILSFIPLAPACVVIRVVTPVYAAHLPYSPLPWRIFWIFLL SSMTFVMLMSLKIMIGMGLQKHASWYVNRCRKRKHHLHSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67960		POD1	POLLEN DEFECTIVE IN GUIDANCE 1...		Lus10033013 [exp]	0	1
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Lus10022858 [exp]	6.6	0.8315
AT1G31730			Adaptin family protein (.1)		Lus10037272 [exp]	15.6	0.8289
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10003525 [exp]	19.4	0.8249
AT2G28520		VHA-A1	vacuolar proton ATPase A1 (.1)		Lus10018129 [exp]	24.0	0.8202
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Lus10041690 [exp]	25.7	0.8256
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10011393 [exp]	26.9	0.8225
AT4G15840			BTB/POZ domain-containing prot...		Lus10002873 [exp]	28.6	0.8067
AT2G22125		POM2, CSI1	POM-POM 2, cellulose synthase-...		Lus10019679 [exp]	30.8	0.8234
AT5G58510			unknown protein		Lus10031851 [exp]	31.3	0.7570
AT2G27900			unknown protein		Lus10000865 [exp]	32.9	0.8053

Compare expression of checked genes

Lus10033013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.