Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01180 924 / 0 ATSS2 starch synthase 2 (.1) AT5G24300 468 / 6e-156 SSI1, SSI, ATSS1 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) AT1G32900 339 / 8e-107 GBSS1 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) AT4G18240 224 / 2e-61 ATSS4, SSIV ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) AT1G11720 207 / 7e-56 ATSS3 starch synthase 3 (.1.2) AT5G01220 50 / 5e-06 SQD2 sulfoquinovosyldiacylglycerol 2 (.1) AT5G65685 45 / 0.0001 UDP-Glycosyltransferase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015371 [exp] 1422 / 0 AT3G01180 928 / 0.0 starch synthase 2 (.1) Lus10022398 [exp] 472 / 1e-157 AT5G24300 874 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10018116 [exp] 472 / 3e-157 AT5G24300 855 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10008279 [exp] 367 / 3e-117 AT1G32900 883 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10033245 [exp] 362 / 1e-115 AT1G32900 885 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10023319 [exp] 220 / 4e-60 AT4G18240 1303 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10038491 [exp] 220 / 5e-60 AT4G18240 1278 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10028133 [exp] 213 / 2e-57 AT4G18240 1285 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10042837 [exp] 211 / 8e-57 AT4G18240 1281 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G084100 [exp] 1026 / 0 AT3G01180 985 / 0.0 starch synthase 2 (.1) Potri.015G012400 [exp] 481 / 7e-161 AT5G24300 904 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Potri.011G152200 [exp] 369 / 5e-118 AT1G32900 880 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.001G449500 [exp] 353 / 5e-112 AT1G32900 922 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.001G351800 [exp] 223 / 5e-61 AT4G18240 1293 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.018G149500 [exp] 198 / 2e-54 AT4G18240 449 / 4e-146 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.004G014100 [exp] 191 / 2e-50 AT1G11720 1460 / 0.0 starch synthase 3 (.1.2) Potri.007G009600 [exp] 85 / 1e-16 AT5G65685 507 / 2e-174 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.016G112600 [exp] 51 / 2e-06 AT5G01220 727 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Potri.006G097600 [exp] 51 / 3e-06 AT5G01220 750 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [flax] [poplar] GT-B PF08323 [flax] [poplar] Glyco_transf_5 Starch synthase catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10033014 pacid=23160455 polypeptide=Lus10033014 locus=Lus10033014.g ID=Lus10033014.BGIv1.0 annot-version=v1.0 ATGGCGTTTGCTGGGTCCTTCCCTTCTCTCACTGAAGTTATTGTAGAGACTTGTCCTCTTTTCCGCTGTAAGAAGAACCAAAACGGTCCAAAGATTCCCT TCTTCAGCTGCAGGCTAAAAATAACCCCCACCAATTTAGGACTTTCAGGCGGTGATAGGCTTTCGCCTAGGTTTAAGGGTCTCAGAGCTACCGGAAAAGA CGCGGAGAAGAATGGTGATAAGTCGGATGATGCACTTCAGGCAACAATTGAGAAGAGCAAGAAGGTTCTTGCTGTGCAAAGAGACTTACTTCAGCAGATC GCTGAAAGAAGGAAATTGGTCTCTTCAATAAATGAAAGTAATCTGAACCCAGAAGCAGATGATGAATCCCTCCTTACAAATGTGGAACCTACTTCAGCTA GTGCTAAGGATGCTTCAAGTCTGGATGATGAATTAGCAACCACGATAAGCGGGAATGAAGATGGCCTGCATAGGAAAAATCTTCGTCCATCTGGACGATT CTCAACAGAAAATGGTACACTCCAGCTAAATGAGCCACCATCAATCGTTTCCCAAGTTTTCACCACAAACAATGTGAAGGGTGAAGATGTTAATGAATCC ACTTTACGAGAGATGAATTCCAGTTTTGATGATATTATGGCCCACGTGAATGATGATACTGTATCGTTTCTCTCAACTACATCCACCATTTCCACCATAA ACAACATGCAGCCTGAATATGTCACTGAATCCTCACCACAAGTCACCAATGATGTTAAAGGTGATTCATATGTAGAAGATGCAGCCCCGCCTCCTTTGGC CGGGCCCAATGTCATGAACGTTATTTTGGTTGCTGCAGAATGTGCACCGTGGTCTAAAACAGGTGGGCTTGGGGATGTTGCCGGTTCTTTACCAAAGGCT TTGGCTCGCCGTGGACATAGGGTTATGGTTGTTGCCCCTCGGTATGGTGCTTATATGGAATCTGAGAACACTGGGATCAGAAAAATTTATAAGGTGGATG GTCAGGATTTAGAGATCACTTACTTTCAAGCCTACATCAACGGTGTGGACTTTGTTTTCATAGACGGCCCCTTGTTTCGCCACATAGAGAACAATATATA TGGAGGAAATCGGATGGATATATTAAAGCGAATGGTGCTATTTTGCAAAGCAGCTGTCGAGGTTCCTTGGCATGTTCCATGTGGTGGTATATGTTACGGA GATGGAAATTTGGTTTTCATTGCCAATGATTGGCATACCGCTTTGCTGCCGGTTTATCTGAAAGCATACTACCGGGACAATGGTTTAATGCAATTCACAA GATCGGTTCTCGTGATTCACAACATCGCTCACCAGGGGCGGGGGCCAGTGGATGATTTCAAATATGTGGATCTGCCAGGAAACTATATTGATCTTTTCAA ATGGTATGATCCTGTTGGTGGAGAGCACTTTAACATATTTGCAGCTGGTCTGAAGGCAGCGGATCGAGTGGTAACTGTAAGTCATGGATATGCATGGGAG CTGAAAACACTGGAAGGTGGTTGGGGCCTGCATAGCATCATTAATGAAAATGATTGGAAGTTGAGAGGCATCGTAAATGGAATCGACACCCAAGAGTGGA ATCCTCAGAATGATGTTCACTTGACATCTGACGGTTATGCAAACTACTCCCTGGAAACACTTGAGACTGGCAAGCCTAAATGCAAGGCAGCATTGCAGAA GGAACTGGGTTTGCCAGAACGTCCAGATGTTCCCCTTATTGGTTTCATTGGAAGACTAGATAACCAGAAAGGTGTTGATCTCATAGCTGAGGCTATTCCA TGGATGGTAGAGCAGGATGTGCAATTAGTCATGCTGGGTACTGGTAGGCAAGACCTGGAACAGATGCTTAGACAGTTTGAAAGTCAATATGGAGACAAAG TCAGGGGATGGGTTGGATTCTCAGTGAAGACAGCTCACAGGATTACTGCTGGTGCCGATATTCTGCTGATGCCATCAAGGTTTGAGCCCTGTGGGTTGAA CCAGCTATATGCAATGACTTATGGGACTATTCCAGTGGTGCATGCTGTTGGTGGTTTAAGAGATACAGTTGAGCCTTTCGATCCATTTAATGAGTCAGGG TTAGGGTGGACTTTTGACAGTGCTGAAGCAAGCAAGCTGATACATGCATTAGGAAACTGCTTGTGGACCTACAGAGAGTTTAAGCGGAGTTGGGAAGGAC TGCAGAGACGAGGAATGGAGCAAGACTTGAGCTGGGACCATGCGGCCCAGTTGTATGAGGAGGTCCTTGTTGCTGCCAAGTACCAATGGTGA
AA sequence Show only first row Show all	>Lus10033014 pacid=23160455 polypeptide=Lus10033014 locus=Lus10033014.g ID=Lus10033014.BGIv1.0 annot-version=v1.0 MAFAGSFPSLTEVIVETCPLFRCKKNQNGPKIPFFSCRLKITPTNLGLSGGDRLSPRFKGLRATGKDAEKNGDKSDDALQATIEKSKKVLAVQRDLLQQI AERRKLVSSINESNLNPEADDESLLTNVEPTSASAKDASSLDDELATTISGNEDGLHRKNLRPSGRFSTENGTLQLNEPPSIVSQVFTTNNVKGEDVNES TLREMNSSFDDIMAHVNDDTVSFLSTTSTISTINNMQPEYVTESSPQVTNDVKGDSYVEDAAPPPLAGPNVMNVILVAAECAPWSKTGGLGDVAGSLPKA LARRGHRVMVVAPRYGAYMESENTGIRKIYKVDGQDLEITYFQAYINGVDFVFIDGPLFRHIENNIYGGNRMDILKRMVLFCKAAVEVPWHVPCGGICYG DGNLVFIANDWHTALLPVYLKAYYRDNGLMQFTRSVLVIHNIAHQGRGPVDDFKYVDLPGNYIDLFKWYDPVGGEHFNIFAAGLKAADRVVTVSHGYAWE LKTLEGGWGLHSIINENDWKLRGIVNGIDTQEWNPQNDVHLTSDGYANYSLETLETGKPKCKAALQKELGLPERPDVPLIGFIGRLDNQKGVDLIAEAIP WMVEQDVQLVMLGTGRQDLEQMLRQFESQYGDKVRGWVGFSVKTAHRITAGADILLMPSRFEPCGLNQLYAMTYGTIPVVHAVGGLRDTVEPFDPFNESG LGWTFDSAEASKLIHALGNCLWTYREFKRSWEGLQRRGMEQDLSWDHAAQLYEEVLVAAKYQW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01180		ATSS2	starch synthase 2 (.1)		Lus10033014 [exp]	0	1
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10035207 [exp]	3.2	0.7811
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Lus10040738 [exp]	6.3	0.7455
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10014717 [exp]	8.0	0.7817
AT2G40840		DPE2	disproportionating enzyme 2 (....		Lus10031010 [exp]	10.5	0.7779
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Lus10031547 [exp]	11.4	0.6927
AT3G29575		AFP3	ABI five binding protein 3 (.1...		Lus10022764 [exp]	13.2	0.7126
AT1G76750			Protein of unknown function (D...		Lus10027057 [exp]	13.7	0.7268
AT3G27520			unknown protein		Lus10022283 [exp]	15.2	0.7430
AT4G03400		GH3-10, DFL2	DWARF IN LIGHT 2, Auxin-respon...		Lus10018565 [exp]	15.7	0.7594
AT1G54570			Esterase/lipase/thioesterase f...		Lus10033848 [exp]	16.6	0.7413

Compare expression of checked genes

Lus10033014 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.