Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19030 59 / 7e-12 ATNLM1, AT-NLM1, NLM1, NIP1;1 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) AT4G18910 57 / 3e-11 ATNLM2, NIP1;2, NLM2 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) AT1G31885 54 / 4e-10 NIP3;1 NOD26-like intrinsic protein 3;1 (.1) AT5G37810 53 / 1e-09 NIP4;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) AT5G37820 52 / 2e-09 NIP4;2, NLM5 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) AT2G34390 50 / 9e-09 NIP2;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 2;1 (.1) AT3G06100 47 / 7e-08 NIP7;1, NLM8, NLM6 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1) AT1G80760 45 / 5e-07 NLM7, NIP6;1 NOD26-like intrinsic protein 6;1 (.1) AT4G10380 41 / 1e-05 AtNIP5;1, NIP5;1, NLM6, NLM8 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035999 [exp] 55 / 2e-10 AT5G37810 343 / 9e-120 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Lus10028520 [exp] 54 / 7e-10 AT5G37820 215 / 4e-64 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Lus10020929 [exp] 53 / 9e-10 AT4G19030 219 / 6e-70 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) Lus10029274 [exp] 53 / 9e-10 AT4G18910 382 / 6e-135 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Lus10025744 [exp] 53 / 9e-10 AT5G37820 207 / 6e-66 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Lus10035918 [exp] 53 / 1e-09 AT5G37820 206 / 2e-65 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Lus10041222 [exp] 46 / 3e-07 AT3G06100 275 / 3e-92 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1) Lus10024066 [exp] 43 / 3e-06 AT1G80760 416 / 2e-147 NOD26-like intrinsic protein 6;1 (.1) Lus10041675 [exp] 43 / 4e-06 AT1G80760 247 / 9e-83 NOD26-like intrinsic protein 6;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G083300 [exp] 110 / 2e-31 AT4G18910 229 / 2e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.004G063000 [exp] 58 / 1e-11 AT4G18910 386 / 4e-136 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.011G072100 [exp] 58 / 1e-11 AT4G18910 406 / 3e-144 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.017G128200 [exp] 56 / 9e-11 AT5G37820 350 / 3e-122 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Potri.002G097000 [exp] 55 / 2e-10 AT4G18910 229 / 3e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.010G112900 [exp] 54 / 3e-10 AT5G37810 332 / 2e-115 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Potri.008G203300 [exp] 46 / 3e-07 AT3G06100 261 / 1e-86 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1) Potri.011G146900 [exp] 45 / 4e-07 AT4G10380 450 / 4e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.003G180900 [exp] 44 / 1e-06 AT1G80760 370 / 2e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.001G046800 [exp] 42 / 7e-06 AT1G80760 371 / 1e-129 NOD26-like intrinsic protein 6;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10033015 pacid=23160421 polypeptide=Lus10033015 locus=Lus10033015.g ID=Lus10033015.BGIv1.0 annot-version=v1.0 ATGTATTTGCTGGTGTTCGTGACATGTGGGTCGGCAGCCATCAGTAGTTCAGACGAGCACCGGATCTCCAAGCTTGGAGCTTCTGTTGCCGGCGGACTTA TAATGACGGTGATGATCTATGCTGTGGGGCACATCTCCGGGGCACACATGAATCCTGCCGTCATCACAGCTTTTGCGGCCGACACTTTCCTTGGAAACAG GGACTTAGCTTTCACTTTAATTGGTGTCGATATAGGATAA
AA sequence Show only first row Show all	>Lus10033015 pacid=23160421 polypeptide=Lus10033015 locus=Lus10033015.g ID=Lus10033015.BGIv1.0 annot-version=v1.0 MYLLVFVTCGSAAISSSDEHRISKLGASVAGGLIMTVMIYAVGHISGAHMNPAVITAFAADTFLGNRDLAFTLIGVDIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19030		ATNLM1, AT-NLM1...	NOD26-LIKE INTRINSIC PROTEIN 1...		Lus10033015 [exp]	0	1

Compare expression of checked genes

Lus10033015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.