Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18835 96 / 4e-27 ZF_HD MIF3 mini zinc finger 3, mini zinc finger (.1) AT3G28917 95 / 7e-27 ZF_HD MIF2 mini zinc finger 2 (.1) AT1G74660 93 / 7e-26 ZF_HD MIF1 mini zinc finger 1 (.1) AT4G24660 79 / 2e-19 ZF_HD ATHB22, MEE68, ZHD2 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) AT2G02540 79 / 1e-18 ZF_HD ATHB21, ZFHD4, ZHD3 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) AT5G15210 77 / 3e-18 ZF_HD ATHB30, ZFHD3, ZHD8 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) AT1G69600 76 / 4e-18 ZF_HD ATHB29, ZFHD1, ZHD11 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1) AT5G65410 75 / 2e-17 ZF_HD ATHB25, ZFHD2, ZHD1 ZINC FINGER HOMEODOMAIN 1, ZINC FINGER HOMEODOMAIN 2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 25, homeobox protein 25 (.1) AT3G28920 73 / 1e-16 ZF_HD ATHB34, ZHD9 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) AT1G14440 73 / 2e-16 ZF_HD ATHB31, ZHD4 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015370 [exp] 157 / 3e-51 AT3G28917 100 / 5e-29 mini zinc finger 2 (.1) Lus10036753 [exp] 77 / 1e-18 AT5G15210 112 / 3e-30 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) Lus10005242 [exp] 77 / 1e-17 AT5G39760 218 / 9e-69 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1) Lus10010694 [exp] 76 / 1e-17 AT2G02540 215 / 5e-68 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10038135 [exp] 74 / 1e-16 AT2G02540 223 / 7e-71 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10007147 [exp] 73 / 3e-16 AT2G18350 222 / 1e-70 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Lus10026010 [exp] 64 / 3e-13 AT1G75240 172 / 2e-52 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10014302 [exp] 64 / 4e-13 AT1G75240 176 / 9e-54 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10031315 [exp] 61 / 2e-12 AT1G75240 137 / 9e-40 zinc-finger homeodomain 5, homeobox protein 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G126600 [exp] 92 / 2e-25 AT3G28917 129 / 5e-40 mini zinc finger 2 (.1) Potri.017G082900 [exp] 80 / 4e-19 AT3G28920 215 / 8e-68 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Potri.010G169400 [exp] 80 / 5e-19 AT1G69600 152 / 2e-44 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1) Potri.002G102900 [exp] 78 / 1e-18 AT4G24660 209 / 9e-68 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.005G158800 [exp] 78 / 1e-18 AT4G24660 204 / 1e-65 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.004G126500 [exp] 78 / 2e-18 AT3G28920 218 / 5e-69 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Potri.013G108900 [exp] 76 / 6e-18 AT4G24660 171 / 2e-52 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.019G081300 [exp] 76 / 1e-17 AT4G24660 166 / 8e-51 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.004G229600 [exp] 73 / 1e-16 AT1G14440 244 / 1e-79 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.005G227900 [exp] 72 / 2e-16 AT2G18350 171 / 4e-52 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04770 [flax] [poplar] ZF-HD_dimer ZF-HD protein dimerisation region
Representative CDS sequence Show only first row Show all	>Lus10033016 pacid=23160433 polypeptide=Lus10033016 locus=Lus10033016.g ID=Lus10033016.BGIv1.0 annot-version=v1.0 ATGAGGAAGAGGCAAGTTGTTGTGAGAAGGCGATCATCGGAAATAGAGGGTTCAAGGAGCACTAGTACTAGAGAGGCGGCGGCCGGGAACTCAGGGACAG CGATTAGGTACGGAGAGTGCCAGAGGAACCATGCCGCAAACGTGGGAGGGTTTGCTGTTGATGGGTGCAGAGAGTTCATGGCAAGTAGCCTTGACCAAGC AACTCCTCTTGCTCTCACTTGCGCTGCTTGTGGCTGCCACCGCAACTTCCACAGAAGAGAAACCCAGGAAGAAGATGCTGTCTCTCATTATTCTTCCCCT ACCGCCAGTGCCACTAATTAA
AA sequence Show only first row Show all	>Lus10033016 pacid=23160433 polypeptide=Lus10033016 locus=Lus10033016.g ID=Lus10033016.BGIv1.0 annot-version=v1.0 MRKRQVVVRRRSSEIEGSRSTSTREAAAGNSGTAIRYGECQRNHAANVGGFAVDGCREFMASSLDQATPLALTCAACGCHRNFHRRETQEEDAVSHYSSP TASATN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28917	ZF_HD	MIF2	mini zinc finger 2 (.1)		Lus10033016 [exp]	0	1
AT2G36330			Uncharacterised protein family...		Lus10032147 [exp]	1.0	0.9282
AT2G18030			Peptide methionine sulfoxide r...		Lus10041922 [exp]	1.4	0.9147
AT2G05320			beta-1,2-N-acetylglucosaminylt...		Lus10001174 [exp]	3.0	0.8760
AT2G26690			Major facilitator superfamily ...		Lus10039782 [exp]	3.5	0.8888
AT2G26690			Major facilitator superfamily ...		Lus10018553 [exp]	8.8	0.8805
AT3G28917	ZF_HD	MIF2	mini zinc finger 2 (.1)		Lus10015370 [exp]	9.4	0.8865
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Lus10019365 [exp]	10.5	0.8854
AT3G15350			Core-2/I-branching beta-1,6-N-...		Lus10019477 [exp]	11.5	0.8837
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Lus10004469 [exp]	12.5	0.8704
AT1G67410			Exostosin family protein (.1)		Lus10015791 [exp]	13.0	0.8701

Compare expression of checked genes

Lus10033016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.