Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15110 509 / 2e-178 Pectate lyase family protein (.1) AT3G01270 500 / 9e-175 Pectate lyase family protein (.1) AT1G14420 439 / 5e-151 AT59 Pectate lyase family protein (.1) AT2G02720 427 / 1e-146 Pectate lyase family protein (.1) AT4G13710 413 / 8e-141 Pectin lyase-like superfamily protein (.1.2) AT3G07010 407 / 3e-139 Pectin lyase-like superfamily protein (.1) AT1G67750 407 / 4e-139 Pectate lyase family protein (.1) AT5G48900 405 / 2e-138 Pectin lyase-like superfamily protein (.1) AT4G13210 403 / 3e-137 Pectin lyase-like superfamily protein (.1.2) AT5G63180 400 / 4e-136 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005254 [exp] 640 / 0 AT3G01270 558 / 0.0 Pectate lyase family protein (.1) Lus10030670 [exp] 601 / 0 AT3G01270 558 / 0.0 Pectate lyase family protein (.1) Lus10015359 [exp] 520 / 0 AT3G01270 396 / 2e-137 Pectate lyase family protein (.1) Lus10036721 [exp] 472 / 2e-164 AT3G01270 565 / 0.0 Pectate lyase family protein (.1) Lus10037207 [exp] 468 / 8e-163 AT3G01270 561 / 0.0 Pectate lyase family protein (.1) Lus10023623 [exp] 451 / 4e-156 AT3G01270 517 / 0.0 Pectate lyase family protein (.1) Lus10030791 [exp] 426 / 3e-146 AT5G15110 533 / 0.0 Pectate lyase family protein (.1) Lus10014887 [exp] 404 / 7e-138 AT5G63180 620 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022817 [exp] 404 / 2e-137 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G078400 [exp] 620 / 0 AT5G15110 481 / 7e-168 Pectate lyase family protein (.1) Potri.004G124100 [exp] 598 / 0 AT5G15110 533 / 0.0 Pectate lyase family protein (.1) Potri.008G148800 [exp] 483 / 1e-168 AT5G15110 523 / 0.0 Pectate lyase family protein (.1) Potri.015G064700 [exp] 471 / 6e-164 AT5G15110 511 / 5e-180 Pectate lyase family protein (.1) Potri.012G091500 [exp] 398 / 6e-136 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G052300 [exp] 400 / 7e-136 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.008G182200 [exp] 398 / 8e-136 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.001G339500 [exp] 396 / 4e-135 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.015G087800 [exp] 397 / 7e-135 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G051800 [exp] 397 / 9e-135 AT1G67750 645 / 0.0 Pectate lyase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase CL0268 [flax] [poplar] PF04431 [flax] [poplar] Pec_lyase_N Pectate lyase, N terminus
Representative CDS sequence Show only first row Show all	>Lus10033018 pacid=23160428 polypeptide=Lus10033018 locus=Lus10033018.g ID=Lus10033018.BGIv1.0 annot-version=v1.0 ATGACACGAGTGTTTATGCTCATCTTATTTATCTCTTTAGCGACGGCAATTCAATGTCTAGGGCAAGGCGGCGTTGCAGATTTGGACGAAGTGTGGCAAA AGAGAGCCGAGGAAGCCAAAAAGAACGCCATGAAGGCTTACGTTCCAAATCCACTCGAAATTGATCTCGAGGAGGCGGTTGCCTCTCAATCCACCCAAAT TGGATGCCCTCCTCCTGCCGAGTTAGCCCCCGGTCTATCATCTACGAGTATGACCGTGGAAGCTCAGGATGATCACACCGACGGGGAAACCGAAAACAAT AGCGAAGAATACAATAACACTACTGAACATTTGGTTGTCCCTGAGGAAGAAAATGATGATGGTGATGAGGTTTTTAATAGCAACGTCAATAGCACGAGGA GGGGTCTGAAGCAAGGGAAAACCAAATATAAGGGGCCTTGCCAGAAGACCAATCCCATAGACAAATGTTGGAGGTGCCGAAAGAATTGGTCCAAGCAACG TCGTAGGCTAGCCAAATGCGCTTTGGGGTTCGGCCGAAGAACAAGAGGTGGGGTCGAAGGAAGGATCTACGTCGTCACTGATAACTCCGACGATGACGTC CTCGAACCAAAACCAGGAACATTGCGGTATGCAGTGATCCAAAGGGAGCCGTTGTGGATTATATTTGCAAGGGACATGAACATCAAGCTGAACAAGGAGC TGATCATGACGAGCAATAAAACTATCGACGGCCGCGGAGCTAACGTCCACATTGCCTTTGGCGCGGGGATTACTATTCAATTTGTTTGTAATGTGATTAT ACATGGGATTCACATCCACCACATTGTGGCCACAAGTGGGGGATTGATTAGGGATTCAGTTGACCATTATGGGCATAGGACTCAAAGCGATGGCGATGGT ATCTCCATCTTCGGCTCAAGCAATGTTTGGATCGATCATGTATCCATGTCTCGCTGCACTGATGGGCTAATTGATGCGATACAAGGATCTACTGCAATCA CCATCTCCAATTCTCATTTTACCCACCACAATGACGCAATTTTGCTGGGGGCAAGTGATAGCTTCTCGGGCGATCAATTTATGCAAATAACAGTAGCATA CAACCATTTTGGACAAGGACTAGTGCAGAGGATGCCAAGGTGTAGATGGGGATTCTTCCATGTTGTAAACAATGACTACACCCATTGGCGTCTATATGCT ATTGGAGGTAGCAAACACCCTACCATTATCAGCCAAGGCAATCAATTCATTGCTCCACACGAAAAAGAACTAAAGCAGATCACAAAGAGAGACTATGCTG GAGAAGATGAGTGGAGGACATGGATATGGAAATCAGAGAAAGACCACTTCTTGAATGGAGCTTATTTCATAGAATCTGGGGAAACAAGTTTGCGGCCAAA CCCAGCTAAGAAGTTCATGATCACACCAAAACCAGGAGTATTTGCAACTAAGATGACCAGATTTGCTGGGGCACTTCATTGCAAACCTAGAAAGAAATGT TAG
AA sequence Show only first row Show all	>Lus10033018 pacid=23160428 polypeptide=Lus10033018 locus=Lus10033018.g ID=Lus10033018.BGIv1.0 annot-version=v1.0 MTRVFMLILFISLATAIQCLGQGGVADLDEVWQKRAEEAKKNAMKAYVPNPLEIDLEEAVASQSTQIGCPPPAELAPGLSSTSMTVEAQDDHTDGETENN SEEYNNTTEHLVVPEEENDDGDEVFNSNVNSTRRGLKQGKTKYKGPCQKTNPIDKCWRCRKNWSKQRRRLAKCALGFGRRTRGGVEGRIYVVTDNSDDDV LEPKPGTLRYAVIQREPLWIIFARDMNIKLNKELIMTSNKTIDGRGANVHIAFGAGITIQFVCNVIIHGIHIHHIVATSGGLIRDSVDHYGHRTQSDGDG ISIFGSSNVWIDHVSMSRCTDGLIDAIQGSTAITISNSHFTHHNDAILLGASDSFSGDQFMQITVAYNHFGQGLVQRMPRCRWGFFHVVNNDYTHWRLYA IGGSKHPTIISQGNQFIAPHEKELKQITKRDYAGEDEWRTWIWKSEKDHFLNGAYFIESGETSLRPNPAKKFMITPKPGVFATKMTRFAGALHCKPRKKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15110			Pectate lyase family protein (...		Lus10033018 [exp]	0	1
AT1G17930			Aminotransferase-like, plant m...		Lus10004830 [exp]	1.0	0.9102
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10004735 [exp]	7.7	0.8068
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10005360 [exp]	8.8	0.7683
AT1G17930			Aminotransferase-like, plant m...		Lus10005495 [exp]	9.5	0.8068
AT4G35150			O-methyltransferase family pro...		Lus10033653 [exp]	10.8	0.7414
					Lus10011594 [exp]	11.0	0.8068
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Lus10025536 [exp]	11.5	0.6883
AT3G05950			RmlC-like cupins superfamily p...		Lus10041900 [exp]	11.6	0.7622
					Lus10025316 [exp]	12.2	0.8068
					Lus10032121 [exp]	13.4	0.8068

Compare expression of checked genes

Lus10033018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.