Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28720 425 / 1e-145 unknown protein AT5G58100 70 / 3e-13 unknown protein AT4G16180 46 / 2e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015362 [exp] 567 / 0 AT3G28720 628 / 0.0 unknown protein Lus10033020 [exp] 192 / 3e-57 AT3G28720 599 / 0.0 unknown protein Lus10008552 [exp] 66 / 7e-12 AT5G58100 886 / 0.0 unknown protein Lus10027581 [exp] 66 / 7e-12 AT5G58100 1451 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G123900 [exp] 480 / 3e-167 AT3G28720 852 / 0.0 unknown protein Potri.017G078700 [exp] 478 / 2e-166 AT3G28720 823 / 0.0 unknown protein Potri.006G080700 [exp] 69 / 6e-13 AT5G58100 1315 / 0.0 unknown protein Potri.018G150600 [exp] 66 / 1e-11 AT5G58100 1362 / 0.0 unknown protein Potri.010G146800 [exp] 45 / 5e-05 AT4G16180 1235 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033019 pacid=23160389 polypeptide=Lus10033019 locus=Lus10033019.g ID=Lus10033019.BGIv1.0 annot-version=v1.0 ATGAGGAGTGTTCGATTTGTTCTTTTGCGATTTCCAATGAGCGAGTATTTGGATTCCAAGAGATTGCATCAGATATTGTCTGACTCAGCTCAAGAGTTTA GGAGGGTAGCTGGAATTCCAGAGGAAGATGAGGAATTTCTCGGTAGAGTACTCCCAGTCTATGTGTTTGATTTGGATTACAGTATGTTGTTGTTGCTTGA TCGTTACCATCAGTCAGTTTCCTTTAGAGATATGGTTGTAGCCGTTAGGACAAGGACTACACAGACTGTGAGTGATTATAGCTGCAACGGTCGTCATGTG TTTACCCACACAAGAGATCTCGAGCGCCCTCTTGTTGGTTCGATTCTACAAAGTATGTGGGGAGTTTCTCCTACTCATCTGTCATGGAGTGCAAGGCATA ATACAACTCTAGTGGACTACACTTGGAGTGTTGGGCAGACACCCTTTGGTCCTTTCTCCGAATCCGCTACTCTATCCTTTGTTCAGAAAGATGCGGCTAG GAGAAATGTGCTCTTGACCTCGTTGAATTACAGTATAACAAGTGCAGTTGATGTTCTTGGATCCATGCAATCTCACGGCGGGGATAGGAAGCTTCTTAAA GGCAATCAGCACGTTGAGTTTGTACGGCGATGGAACTTGTTCAAGCACAAGATAGACAAGGCTATTTCTGCAATGTCGCGGTTTGATTTCGAGATGGCTT CGTATTACTTGAGGTCATCAGATCACGACCTGTACGCCATTCACTCCCTAGTGTACCTTGCATCACATGAATTGGAGGCATCGCTTGCTTGTTTCAAAGA TCCGCCATTCCCATGGGGCTCGGTGTCGTTATCTGCAGCTGGTTTCTTCGGTGTGTGTTATGTGTATGCAAAGAGAGACAGACTTTTTAGGAACAAGAGG AAGCAGTTTTGA
AA sequence Show only first row Show all	>Lus10033019 pacid=23160389 polypeptide=Lus10033019 locus=Lus10033019.g ID=Lus10033019.BGIv1.0 annot-version=v1.0 MRSVRFVLLRFPMSEYLDSKRLHQILSDSAQEFRRVAGIPEEDEEFLGRVLPVYVFDLDYSMLLLLDRYHQSVSFRDMVVAVRTRTTQTVSDYSCNGRHV FTHTRDLERPLVGSILQSMWGVSPTHLSWSARHNTTLVDYTWSVGQTPFGPFSESATLSFVQKDAARRNVLLTSLNYSITSAVDVLGSMQSHGGDRKLLK GNQHVEFVRRWNLFKHKIDKAISAMSRFDFEMASYYLRSSDHDLYAIHSLVYLASHELEASLACFKDPPFPWGSVSLSAAGFFGVCYVYAKRDRLFRNKR KQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28720			unknown protein		Lus10033019 [exp]	0	1
					Lus10011017 [exp]	13.5	0.6581
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10003706 [exp]	19.8	0.6565
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10015595 [exp]	22.7	0.6386
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10032911 [exp]	27.2	0.6432
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Lus10034863 [exp]	33.6	0.5847
AT1G69800			Cystathionine beta-synthase (C...		Lus10013265 [exp]	33.9	0.6398
					Lus10042417 [exp]	40.2	0.6281
AT1G69800			Cystathionine beta-synthase (C...		Lus10030788 [exp]	40.4	0.6336
AT1G09157			Protein of unknown function (D...		Lus10030466 [exp]	42.0	0.6309
AT3G13400		SKS13	SKU5 similar 13 (.1)		Lus10036492 [exp]	56.6	0.6036

Compare expression of checked genes

Lus10033019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.