Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28720 550 / 0 unknown protein AT5G58100 49 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015362 [exp] 462 / 1e-160 AT3G28720 628 / 0.0 unknown protein Lus10033019 [exp] 215 / 9e-66 AT3G28720 450 / 2e-155 unknown protein Lus10001710 [exp] 206 / 4e-63 AT3G28720 149 / 4e-41 unknown protein Lus10024539 [exp] 85 / 4e-18 ND 51 / 4e-07 Lus10000345 [exp] 48 / 2e-06 AT5G01650 52 / 2e-11 Tautomerase/MIF superfamily protein (.1.2) Lus10008552 [exp] 45 / 9e-05 AT5G58100 886 / 0.0 unknown protein Lus10027581 [exp] 45 / 0.0001 AT5G58100 1451 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G123900 [exp] 605 / 0 AT3G28720 852 / 0.0 unknown protein Potri.017G078700 [exp] 588 / 0 AT3G28720 823 / 0.0 unknown protein Potri.018G150600 [exp] 49 / 6e-06 AT5G58100 1362 / 0.0 unknown protein Potri.006G080700 [exp] 46 / 5e-05 AT5G58100 1315 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033020 pacid=23160435 polypeptide=Lus10033020 locus=Lus10033020.g ID=Lus10033020.BGIv1.0 annot-version=v1.0 ATGCCCACCACCACCGTCTTCCTGCTTCTCCTCCTCTCCGTCGCCGCCTCCGCCGCCGACCCGGTCCCCGGCCTCGACACCTTCCTCACCACCCAATCCC ACATCGACCCACAAGCCTCTAACGATACCTTCGGATCTCTCCCTTCCTCCCTCAAGAAATCCCTCTCTTCCCTTCCCGACTCCACAAACACCGTCAATTC TTTGATCTCCTCCCTCCTATCCCTCTCCCTCCCTCTCTCTATCCATCTCCGCCTCGTCGGCTCCGCCTTCCCCTCCGCTGAATCCTCCGCCGACATCCTC TCCTCCTTCTTCTCCTCCACACACACCTCCGACCACTTCCACGTCATCACTCCTGATCCCGTCCCTCCTCACAAGAACTCCCACCGCCTTGCCCTCCGCC ACTCTCCTCACCTCGACGTCTCCCACTCCCCTACTTCCTTCGCATCCCGTCTCTCTGATGCCATCAAATCAGCCATCTCCTCCACCCCAACCCCTCTCCG TTCCTCCCTCCTCTCCATCCCTTACGACACCGTCGATCACATCATCCGTCAGGAATACGAGAAGGAAAAGCCCGCTCACGGGATCTACATCTACCTAATT TCCTTGGGTTCTCAGTCCAAGAACTACGCATATTCTTATTCCCCCGGCGACTCTTCGCCTGGGTTTACCAAATGCTCGGGCACTATTTGGACTGGCAAGG AGAGGTATATCTGGATTGATCTATCCGCCGGCCCTGTGGATTATGGCCCGGCTTTATCGGGCGATGGTGTTTTGCCCAGAGGCGAGTTTCACCCTCTTGC CGCTATGCACGGCCGCCCAAAGTCAGATAAGGCTCTCCTTTCCGACTTGGCTTCCGTGGTTTGGAGCGCGTATCAGGTACTTCTGGTGCCTTCGCTGAGA ATTCCTGTCCATTTTGACAACTCCTTGATTGTTCAGTTCGTTCATATTTATGCGTCTAAGAACGGTAAGGATCAGAGTGGGTTGGACTGGAACGCGATTG AGAGGAGTTTTAAGGATGGTGCTAGTGAGGATGGGTTGTTGTTGGGGGATCAGTCTCTGACCTTCAAAAGCTATGAAGTGAAATATGAGGAGTGTTCGAT TTGTTCTTTTGCGATTTCCAAGTCTGTTAATTCGTATACTTCTAGGTTCTTGTTTGATAACTATACTCTGATAGTGAGCGAGTATTTGGATTCCAAGAGA TTGCATCAGATATTGTCTGACTCAGCTCAAGAGTTTAGGAGGGTAGCTGGAATTCCAGAGGAAGATGAGGAATTTCTCGGTAGAGTACTCCCAGTCTATG TGTTTGATTTGGATTACAGTATGTTGTTGTTGCTTGATCGTTACCATCAGTCAGTTTCCTTTAGAGATATGGTTGGGGACGTTAGGACAAGGACTACACA GACTGTGAGTGATTATAGCTGCAACGGTCGTCATGTGTTTACCCACACAAGAGATCTCGAGCGCCCTCTTGTTGGTTCGATTCTACAGGGTTGTTGTTGG GGGATCAGTCTCTGA
AA sequence Show only first row Show all	>Lus10033020 pacid=23160435 polypeptide=Lus10033020 locus=Lus10033020.g ID=Lus10033020.BGIv1.0 annot-version=v1.0 MPTTTVFLLLLLSVAASAADPVPGLDTFLTTQSHIDPQASNDTFGSLPSSLKKSLSSLPDSTNTVNSLISSLLSLSLPLSIHLRLVGSAFPSAESSADIL SSFFSSTHTSDHFHVITPDPVPPHKNSHRLALRHSPHLDVSHSPTSFASRLSDAIKSAISSTPTPLRSSLLSIPYDTVDHIIRQEYEKEKPAHGIYIYLI SLGSQSKNYAYSYSPGDSSPGFTKCSGTIWTGKERYIWIDLSAGPVDYGPALSGDGVLPRGEFHPLAAMHGRPKSDKALLSDLASVVWSAYQVLLVPSLR IPVHFDNSLIVQFVHIYASKNGKDQSGLDWNAIERSFKDGASEDGLLLGDQSLTFKSYEVKYEECSICSFAISKSVNSYTSRFLFDNYTLIVSEYLDSKR LHQILSDSAQEFRRVAGIPEEDEEFLGRVLPVYVFDLDYSMLLLLDRYHQSVSFRDMVGDVRTRTTQTVSDYSCNGRHVFTHTRDLERPLVGSILQGCCW GISL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28720			unknown protein		Lus10033020 [exp]	0	1
AT1G61790			Oligosaccharyltransferase comp...		Lus10018363 [exp]	1.0	0.9600
AT3G10290			Nucleotide-sugar transporter f...		Lus10042039 [exp]	1.7	0.9125
AT4G32390			Nucleotide-sugar transporter f...		Lus10002904 [exp]	2.4	0.9365
AT3G46520		ACT12	actin-12 (.1)		Lus10016259 [exp]	3.9	0.9002
AT1G67330			Protein of unknown function (D...		Lus10011360 [exp]	4.0	0.9030
AT2G22900			Galactosyl transferase GMA12/M...		Lus10011550 [exp]	4.9	0.8914
AT2G32380			Transmembrane protein 97, pred...		Lus10039668 [exp]	9.5	0.8850
AT4G01400			unknown protein		Lus10030195 [exp]	10.1	0.8957
AT5G41460			Protein of unknown function (D...		Lus10024663 [exp]	12.7	0.8752
AT3G10290			Nucleotide-sugar transporter f...		Lus10018043 [exp]	13.2	0.8567

Compare expression of checked genes

Lus10033020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.