Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23430 55 / 8e-08 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 54 / 2e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 54 / 2e-07 TAF5 TBP-associated factor 5 (.1) AT5G56130 51 / 1e-06 THO3, AtTEX1 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 51 / 1e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 49 / 4e-06 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G79990 49 / 7e-06 structural molecules (.1.2.3.4.5) AT2G16780 49 / 8e-06 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT3G18860 49 / 1e-05 transducin family protein / WD-40 repeat family protein (.1.2) AT5G24710 49 / 1e-05 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015361 [exp] 265 / 2e-86 AT3G28715 120 / 2e-32 ATPase, V0/A0 complex, subunit C/D (.1.2) Lus10023563 [exp] 59 / 6e-09 AT1G49040 1743 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Lus10040449 [exp] 57 / 2e-08 AT1G49040 1816 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Lus10024447 [exp] 56 / 7e-08 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10036881 [exp] 55 / 1e-07 AT1G24530 409 / 5e-141 Transducin/WD40 repeat-like superfamily protein (.1) Lus10041271 [exp] 52 / 6e-07 AT5G15550 635 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10007449 [exp] 52 / 9e-07 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1) Lus10037439 [exp] 50 / 2e-06 AT5G15550 635 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10006233 [exp] 47 / 2e-06 AT1G24530 110 / 4e-30 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G079100 [exp] 637 / 0 AT5G25150 65 / 8e-11 TBP-associated factor 5 (.1) Potri.015G049500 [exp] 57 / 2e-08 AT1G49040 1810 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.012G060800 [exp] 56 / 7e-08 AT1G49040 1782 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.T125104 [exp] 54 / 2e-07 AT3G18860 1114 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.009G112184 [exp] 54 / 2e-07 AT3G18860 1128 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.004G150700 [exp] 53 / 4e-07 AT3G18860 1099 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.007G009500 [exp] 52 / 5e-07 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 52 / 6e-07 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.018G020200 [exp] 51 / 1e-06 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.002G051900 [exp] 51 / 1e-06 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10033021 pacid=23160378 polypeptide=Lus10033021 locus=Lus10033021.g ID=Lus10033021.BGIv1.0 annot-version=v1.0 ATGGAGGCGGTCGAGTCATGTCCCTGTCCCTCCAGTTCGACCATCATTACTGATTTGACTGAGGACTCTCTGGCTCACTGCGCCAATTTCCTCTCCCGCC ACGATCTTTCCAGCTTCGCTACCTCTTCCAAGTACCTCTTTCGTGTTGCTTACTCCGATTCCGTCTGGCATCGCTTGTTCAGGGAGCGCTGGCCACATGT AACCACGTCCAATTTTCCGGCAAATTCACGAGTTAGGGACTCCTACCTGGCTAGGGATGCTGCTGTTCGCCACTTCAGCTTTGATAATCCTTCCGTTCTA GACTTCTATACTGATGCCAAACCTCTTTTTGATCATATCATTTTGGACGGCGATGACATTCTCTTTTCTCAGGGTTCCTCCATTGAAAGGATCCGGACAA GTAATTTCCTTAACGACAAAGATGCTAGAACTACACTGCGGGATCACAGAGCTAGAATCACTTGTATGCGAGTATATTCGCTTGATGATACCACCTATCG AAGTGAAACTCAAAGGAAACAGAGAGCTCTGGTGACCTCCAGCTGTGACCACACTATTCGTTTGTGGTGGAAGGGTTCGTGTCGACGATGTCTGAGAGGG CATAACGGTCCTGTTACCTGCTTATCGGATAGATTGCTTGGGGATGGTAGCGCAAAAGTACTGGCAAGTGGTGGTGAAGATGGCACGGTTCGTCTTTGGT CCCTAAGTTCAACTGGAAAACGTGGACAGCAAGCTTTAAAAGCTACACTTTATGGGCATGAGAAACCTATAAAACAGATGTCAGTTGCAGAGCACAACAC TTCTCTTTTGGTGACCATTTCAAATGATTCCAAGGTGAGGGTCTGGGATGCCAGTACATCGACTGCTGTACGTTCTTCATGCTGTCTGGGGATGATTTCC GTACCAGGTGCACCGGTTGATATGAAGTTGTACGAGTCTTTACTATATGTAGCCTCTGGATCTTCTGTTGTAACAATTGATTTGAGGACCATGCAAAAAG TTGGTGTTCCAGCAGTCTATCGGTCGAATCTATTCTCATTTGCCATGGTTCCTTCAAAACCTATGTTCTGCACCGGTGCAATGGGCAAAGGGATGCTTTG GGACATGAGGAGAAACCAGGAGACTATAAAACCAGAACCAGTTGCTGAGTTGGACGGACATATCGGTCCAATAACACAGTTACACGCTGACGGATACAAG ATAGTTGCAGGAGGGCCAGAGGATAATCGTGTAAATGTCTGGGAAGCTGACAATGGCACACAAACAAACTCCTTGATGTGTTGTGGTTCAGAGGATCCAG AAAGCGCCTCTTCTGGGTGTATGGCCATGGCTGTTGATGGAACTCGGATTGTGACTGCTGGTACTAGTAGTGAAGAATATGGACTTATTCGGTTCAGGGA TTTCTTGCATGCTACTGCTCCAGTTTCAAGAGCACCCGATGAGGACAACTCTTCAAAGTTTTGGGATCAATCTGACAGACGACAGCGTTATTAG
AA sequence Show only first row Show all	>Lus10033021 pacid=23160378 polypeptide=Lus10033021 locus=Lus10033021.g ID=Lus10033021.BGIv1.0 annot-version=v1.0 MEAVESCPCPSSSTIITDLTEDSLAHCANFLSRHDLSSFATSSKYLFRVAYSDSVWHRLFRERWPHVTTSNFPANSRVRDSYLARDAAVRHFSFDNPSVL DFYTDAKPLFDHIILDGDDILFSQGSSIERIRTSNFLNDKDARTTLRDHRARITCMRVYSLDDTTYRSETQRKQRALVTSSCDHTIRLWWKGSCRRCLRG HNGPVTCLSDRLLGDGSAKVLASGGEDGTVRLWSLSSTGKRGQQALKATLYGHEKPIKQMSVAEHNTSLLVTISNDSKVRVWDASTSTAVRSSCCLGMIS VPGAPVDMKLYESLLYVASGSSVVTIDLRTMQKVGVPAVYRSNLFSFAMVPSKPMFCTGAMGKGMLWDMRRNQETIKPEPVAELDGHIGPITQLHADGYK IVAGGPEDNRVNVWEADNGTQTNSLMCCGSEDPESASSGCMAMAVDGTRIVTAGTSSEEYGLIRFRDFLHATAPVSRAPDEDNSSKFWDQSDRRQRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10033021 [exp]	0	1
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039428 [exp]	1.0	0.9256
AT3G25570			Adenosylmethionine decarboxyla...		Lus10019146 [exp]	1.7	0.8994
AT4G16770			2-oxoglutarate (2OG) and Fe(II...		Lus10004746 [exp]	4.0	0.8974
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10005091 [exp]	5.3	0.9038
					Lus10042562 [exp]	6.0	0.8906
AT5G04980			DNAse I-like superfamily prote...		Lus10028884 [exp]	6.5	0.8677
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10006068 [exp]	7.1	0.8789
AT2G17787			unknown protein		Lus10013567 [exp]	7.4	0.8964
AT4G36550			ARM repeat superfamily protein...		Lus10041754 [exp]	8.0	0.8492
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Lus10010088 [exp]	9.0	0.8546

Compare expression of checked genes

Lus10033021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.