Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28715 590 / 0 ATPase, V0/A0 complex, subunit C/D (.1.2) AT3G28710 588 / 0 ATPase, V0/A0 complex, subunit C/D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030672 [exp] 620 / 0 AT3G28715 693 / 0.0 ATPase, V0/A0 complex, subunit C/D (.1.2) Lus10005252 [exp] 620 / 0 AT3G28715 691 / 0.0 ATPase, V0/A0 complex, subunit C/D (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G079200 [exp] 603 / 0 AT3G28715 691 / 0.0 ATPase, V0/A0 complex, subunit C/D (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01992 [flax] [poplar] vATP-synt_AC39 ATP synthase (C/AC39) subunit
Representative CDS sequence Show only first row Show all	>Lus10033022 pacid=23160390 polypeptide=Lus10033022 locus=Lus10033022.g ID=Lus10033022.BGIv1.0 annot-version=v1.0 ATGAACCTCTCCGCCACCGAGTATGGTCCCTATCTTCAGAACGAGCCCTCTCCCTTGCATACCACTACAATTGTGGAGAAATGCACCCTGAAACTTGTTG ATGAGTACAAGCATATGTTATGCCAAGCTACAGAGCCTTTAGCTACCTTCCTAGAGAATTGCACATATGGCCATATGATAGACAATGTTGTTTTGATTGT TACTGGAACTTTGCATGAGAGAGATGTTGAAGAGCTATTGGAGAAATGCCACCCTCTTGGCATGTTTGACAGCATTGCTACTCTGGCTGTTGCCCACAAC ATGAGAGAACTTTACCGACTGGTGCTTGTTGACTCACCATTGGCTCCATATTTCTCTGAATGCATCACATCAGAGGACTTGGATGACATGAATATCGAGA TCATGAGGAATACACTTTATAAGGCGTATCTTGAAGATTTTTACAGGTTCTGCCAGAAACTTGGTGGATCGACAGCTGAGATTATGTCTGACCTCCTTGC ATTTGAAGCTGACAGGAGAGCTGTCAACATATCCATAAATAGCATTGGTACAGAGCTTACCCGTGATGACCGAAGGAAACTGTACTCTAATTTTGGGCTA CTCTATCCTTATGGACACGAGGAACTTGCTGCGTGCGAGGACTTGGACCAGGTTCGTGGTGCTATGGAGAAGTACCCTCCATATCAGGCAATATTCTCCA AGTTGTCCTACGGTGAAAGCCAGCTGCTTGACAAAGCGTTTTACGAGGAGGAAGTGAAAAGACTGTGCTTGTCTTTTGAGCAACAGTTCCACTACGGTGT GTTCTTTGCATACATAAGATTAAGGGAGCAGGAGATTAGGAACCTGATGTGGATATCGGAATGCGTGGCCCAGAACCAGAAGTCGAGAGTGCATGACAGC GTGGTCTTCATATTTTGA
AA sequence Show only first row Show all	>Lus10033022 pacid=23160390 polypeptide=Lus10033022 locus=Lus10033022.g ID=Lus10033022.BGIv1.0 annot-version=v1.0 MNLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLATFLENCTYGHMIDNVVLIVTGTLHERDVEELLEKCHPLGMFDSIATLAVAHN MRELYRLVLVDSPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYRFCQKLGGSTAEIMSDLLAFEADRRAVNISINSIGTELTRDDRRKLYSNFGL LYPYGHEELAACEDLDQVRGAMEKYPPYQAIFSKLSYGESQLLDKAFYEEEVKRLCLSFEQQFHYGVFFAYIRLREQEIRNLMWISECVAQNQKSRVHDS VVFIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10033022 [exp]	0	1
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Lus10016438 [exp]	4.0	0.7973
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10035232 [exp]	4.0	0.8434
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10012554 [exp]	4.5	0.7280
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10004809 [exp]	4.7	0.7266
AT4G23840			Leucine-rich repeat (LRR) fami...		Lus10003886 [exp]	7.2	0.7822
AT5G18070		DRT101	DNA-DAMAGE-REPAIR/TOLERATION 1...		Lus10007548 [exp]	13.9	0.7362
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Lus10029958 [exp]	14.7	0.7721
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10034903 [exp]	15.1	0.7697
AT4G38870			F-box and associated interacti...		Lus10034309 [exp]	24.7	0.7861
AT2G03090		ATHEXPALPHA1.3,...	EXPANSIN 15, expansin A15 (.1)		Lus10020257 [exp]	35.7	0.6869

Compare expression of checked genes

Lus10033022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.