Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26695 197 / 1e-63 Ran BP2/NZF zinc finger-like superfamily protein (.1) AT3G15680 112 / 4e-30 Ran BP2/NZF zinc finger-like superfamily protein (.1) AT5G25490 103 / 1e-26 Ran BP2/NZF zinc finger-like superfamily protein (.1) AT2G17975 64 / 2e-11 zinc finger (Ran-binding) family protein (.1) AT1G48570 51 / 6e-07 zinc finger (Ran-binding) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030054 [exp] 246 / 2e-82 AT2G26695 196 / 8e-66 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10021194 [exp] 232 / 3e-76 ND / Lus10024456 [exp] 233 / 2e-70 AT5G49880 508 / 2e-170 mitotic checkpoint family protein (.1) Lus10019433 [exp] 207 / 4e-66 AT2G26695 198 / 2e-65 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10043289 [exp] 202 / 2e-64 AT2G26695 198 / 8e-66 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10005469 [exp] 201 / 2e-64 ND / Lus10012671 [exp] 169 / 1e-51 ND / Lus10002032 [exp] 105 / 2e-27 AT3G15680 182 / 3e-59 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10002896 [exp] 105 / 3e-27 AT3G15680 181 / 9e-59 Ran BP2/NZF zinc finger-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G149900 [exp] 191 / 4e-61 AT2G26695 177 / 2e-58 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.018G066900 [exp] 181 / 3e-56 AT2G26695 177 / 2e-57 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.003G061300 [exp] 125 / 3e-35 AT3G15680 161 / 2e-51 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.001G172700 [exp] 115 / 3e-31 AT3G15680 170 / 7e-55 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.018G029900 [exp] 115 / 4e-31 AT3G15680 176 / 4e-57 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.006G251300 [exp] 110 / 2e-29 AT3G15680 167 / 1e-53 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.015G038200 [exp] 62 / 1e-10 AT1G48570 335 / 4e-111 zinc finger (Ran-binding) family protein (.1) Potri.012G046500 [exp] 60 / 1e-09 AT1G48570 338 / 3e-110 zinc finger (Ran-binding) family protein (.1) Potri.005G115100 [exp] 52 / 1e-07 AT2G17975 328 / 4e-113 zinc finger (Ran-binding) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00641 [flax] [poplar] zf-RanBP Zn-finger in Ran binding protein and others
Representative CDS sequence Show only first row Show all	>Lus10033023 pacid=23177047 polypeptide=Lus10033023 locus=Lus10033023.g ID=Lus10033023.BGIv1.0 annot-version=v1.0 ATGAGCTGGACGGGAGGTGACTGGATGTGTGCAGCCTGCCAACACCAGAACTTCAAGAAGAGAGAAGCATGTCAAAGATGTGGGTATCCCAAATACGGAG GGCCCGATATTTCGACGTATATGTACAACAAAACGGATGTATTGGCAGGGGACTGGTATGGCATTGCCATGAATTGTGGAGCTCACAACTACGCCAGCCG AACTAGCTGTTATAGATGTGGCTCCGTCTATGCTAATGCTGCTGCTGCTGCTACTCCTGGAGCTTATGGCTCAGATCATTCCGGTTCTCCTCCTGGATGG AAGTCTGGCGATTGGATATGTGCTAGGATGGATTGTGGAGCATACAATTTTGCTAGCAGGGGAGAATGCTTCAAATGCAGGACACCAAGGGAATATGGCT TCTCGTCGGTTCATTATGGATATCAGAATGAGTATGACTGTGGTTATGGTGATTTCACCAATGGGAGTTCGAATGATCAAGCCTATTCAAATTGGCAAGA CCAATCTGTCTTTCATGGTGATTCACAATTTGGAAACTCGATGAATGGGAGTTATGGTCCCTCCACTTCCAATGAAGATATTGTCAAGCTAATCCAAAAC ATTGAAGCTCGTTATCATGCCGATATAGCTATTCAAGCGGCTCACGATGCAAGGATTGAAACATCTTTGGGAGAGCTTCAAGAGTCCATCAATTTCATTG CTTTCCAACTTAAAGAAGAAAGAAATAGTCATCGAGCATCTCAACAAGTGTCTAGCTCTTCATGCCCTATCATGGAAACAACAAGTGTTGAGAAGTTATT AAGTGATTTTACAAGACAATTTGGGGATAGATTGGTAAAGCAAGAAGACAAGATTGATCGCTTGTCAAGTAAAATGGACGGTGAGCCTAACTCCTTACAA AATGGTTTATGGAAAACGACCACCTACGCCATGCTATTATGTCCCTGGGACAACTCTTGTAGCGCCAGTGGACGAGGAACTTAA
AA sequence Show only first row Show all	>Lus10033023 pacid=23177047 polypeptide=Lus10033023 locus=Lus10033023.g ID=Lus10033023.BGIv1.0 annot-version=v1.0 MSWTGGDWMCAACQHQNFKKREACQRCGYPKYGGPDISTYMYNKTDVLAGDWYGIAMNCGAHNYASRTSCYRCGSVYANAAAAATPGAYGSDHSGSPPGW KSGDWICARMDCGAYNFASRGECFKCRTPREYGFSSVHYGYQNEYDCGYGDFTNGSSNDQAYSNWQDQSVFHGDSQFGNSMNGSYGPSTSNEDIVKLIQN IEARYHADIAIQAAHDARIETSLGELQESINFIAFQLKEERNSHRASQQVSSSSCPIMETTSVEKLLSDFTRQFGDRLVKQEDKIDRLSSKMDGEPNSLQ NGLWKTTTYAMLLCPWDNSCSASGRGT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10033023 [exp]	0	1
AT5G14610			DEAD box RNA helicase family p...		Lus10035149 [exp]	1.0	0.9376
AT5G20990		B73, CNX1, SIR4...	SIRTINOL 4, CO-FACTOR FOR NITR...		Lus10000717 [exp]	2.0	0.8562
AT1G72200			RING/U-box superfamily protein...		Lus10041134 [exp]	3.0	0.7820
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10004309 [exp]	3.5	0.8478
					Lus10008005 [exp]	4.0	0.7889
AT5G43400			Uncharacterised conserved prot...		Lus10016990 [exp]	5.1	0.7105
AT1G18060			unknown protein		Lus10012667 [exp]	5.3	0.7970
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10027030 [exp]	6.3	0.8188
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10035637 [exp]	9.8	0.8227
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10006555 [exp]	11.2	0.8150

Compare expression of checked genes

Lus10033023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.