Plant FIBer expression Database

Lus10033024 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G47760 288 / 1e-98 ATPK5, ATPGLP2 2-phosphoglycolate phosphatase 2 (.1)
AT5G36700 226 / 1e-73 ATPGLP1, 2-PHOSPHOGLYCOLATEPHOSPHATASE1 2-phosphoglycolate phosphatase 1 (.1.2.3.4)
AT5G36790 226 / 1e-73 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039102
[exp]
360 / 8e-127 AT5G47760 497 / 2e-179 2-phosphoglycolate phosphatase 2 (.1)
Lus10038761
[exp]
325 / 2e-113 AT5G47760 439 / 4e-157 2-phosphoglycolate phosphatase 2 (.1)
Lus10026241
[exp]
234 / 3e-77 AT5G36700 536 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4)
Lus10042429
[exp]
234 / 3e-76 AT5G36700 541 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4)
Lus10038760
[exp]
164 / 2e-51 AT5G47760 305 / 1e-105 2-phosphoglycolate phosphatase 2 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G004200
[exp]
300 / 3e-103 AT5G47760 516 / 0.0 2-phosphoglycolate phosphatase 2 (.1)
Potri.010G180400
[exp]
238 / 7e-78 AT5G36700 514 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4)
Potri.008G077400
[exp]
235 / 5e-77 AT5G36700 508 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4)
Potri.006G003501
[exp]
62 / 4e-13 AT5G47760 96 / 9e-26 2-phosphoglycolate phosphatase 2 (.1)
PFAM info
Representative CDS sequence
>Lus10033024 pacid=23176966 polypeptide=Lus10033024 locus=Lus10033024.g ID=Lus10033024.BGIv1.0 annot-version=v1.0
ATGAGCTCACAAGCACCATCAACAGCGATTCAGCTCCTCAATCCTAATACTGCTCAATCTCTCGTCGACTCCGTTGAAGCTTTCCTCTTTGATTGCGATG
GCGTGATCTGGAAGGGAGACAAGCTCATCGACGGCGTCTCTCAAACTCTTGATTTGCTCCGCTCCAAGGGGAAGAAGCTGGTTTTCGTCACCAACAATTC
CACCAAGTCCAGACGCCAATATGCCGCCAAATTCCATTTTCTTGGCATTTCAGTCAGCGAGGATGAGATTTTCTCCTCCTCTTTCGCTGCGGCAATGTAC
TTGAAAGTCAATGAATTCCCTCCAGAGAAGAAGGAAGATGCAGAGAAAAGAGCAGAATGGAAATCAAATACTCTCTTCGAACACGATAAAACTGTTGGAG
CAGTTGTTGTGGGATTAGATCCCTATGTCAACTACCACAAGCTTCAATATGGAACCCTCTGCATACGTGAGAATCCGGGTTGCCTTTTCATCGCAACTAA
CCGCGATGCAGTTGGCCACATGACTGATCTTCAAGAGTGGCCTGGTGAGGGAGGAGTTCATTCAGCTTTCCTTTTATTTTCATGCAAATCTCAAATTGGC
TCTCAGAACCAATGA
AA sequence
>Lus10033024 pacid=23176966 polypeptide=Lus10033024 locus=Lus10033024.g ID=Lus10033024.BGIv1.0 annot-version=v1.0
MSSQAPSTAIQLLNPNTAQSLVDSVEAFLFDCDGVIWKGDKLIDGVSQTLDLLRSKGKKLVFVTNNSTKSRRQYAAKFHFLGISVSEDEIFSSSFAAAMY
LKVNEFPPEKKEDAEKRAEWKSNTLFEHDKTVGAVVVGLDPYVNYHKLQYGTLCIRENPGCLFIATNRDAVGHMTDLQEWPGEGGVHSAFLLFSCKSQIG
SQNQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G47760 ATPK5, ATPGLP2 2-phosphoglycolate phosphatase... Lus10033024
[exp]
0 1
AT3G44716 unknown protein Lus10009406
[exp]
1.4 0.8154
AT5G32440 Ubiquitin system component Cue... Lus10027699
[exp]
4.2 0.7367
AT1G05170 Galactosyltransferase family p... Lus10027185
[exp]
4.7 0.8011
AT5G17260 NAC ANAC086 NAC domain containing protein ... Lus10010371
[exp]
8.7 0.7796
AT5G12380 ANNAT8 annexin 8 (.1) Lus10010666
[exp]
9.2 0.7378
AT2G26600 Glycosyl hydrolase superfamily... Lus10038099
[exp]
11.2 0.7608
AT4G11880 MADS AGL14 AGAMOUS-like 14 (.1) Lus10006716
[exp]
15.8 0.7822
AT5G04780 Pentatricopeptide repeat (PPR)... Lus10021649
[exp]
17.0 0.7491
AT1G50670 OTU-like cysteine protease fam... Lus10021522
[exp]
17.3 0.7621
AT1G03750 SWI2, SNF2, CHR... CHROMATIN REMODELING 9, switch... Lus10017712
[exp]
19.0 0.7782

Lus10033024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.