Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08070 882 / 0 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 548 / 0 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G08820 509 / 9e-172 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 509 / 2e-170 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G12770 499 / 8e-168 MEF22 mitochondrial editing factor 22 (.1) AT4G02750 497 / 9e-166 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22690 494 / 5e-164 unknown protein AT1G20230 488 / 1e-162 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 490 / 4e-162 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 485 / 5e-162 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030053 [exp] 1296 / 0 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 566 / 0 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 547 / 0 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 543 / 0 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 519 / 1e-173 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010909 [exp] 508 / 2e-171 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 503 / 1e-169 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031989 [exp] 485 / 6e-162 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 479 / 8e-159 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G040100 [exp] 1053 / 0 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 605 / 0 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 592 / 0 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 571 / 0 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 567 / 0 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G128900 [exp] 565 / 0 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G011000 [exp] 563 / 0 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 539 / 0 AT3G22690 582 / 0.0 unknown protein Potri.005G012600 [exp] 530 / 6e-180 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G322100 [exp] 518 / 3e-175 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10033026 pacid=23176997 polypeptide=Lus10033026 locus=Lus10033026.g ID=Lus10033026.BGIv1.0 annot-version=v1.0 ATGGCGGCGTTTTCTTCTCCACCTTCAATCGCAGTTTCAACCACAGCAATTCCCCATTTCCTTCCATTCTCAGATCCTCCATACCAACTCCTTGAAAACC ACCCATCCCTTGCTCTCCTCTCAACCTGCAAAAACCATCGAACTTTCAAGGAAATCCACTCTCTCGTCATCAGAACAGGCCTCCACAACACCCAATTCTG CCTCAGCAAGCTCATCGAGTTCTGTGCAGTTTCTCCCTTTGGTGACCTGGCTTACGCCCTGTCACTTTTTGAGTCTGTCGAAAATCCTGATCAGATAATC TGGAACCATATCATCCGGGGATTCGCCTTGGGTGAATCCCCGATTCTTGCCGTGAAATTCTACATCCGGATGATGGTGTCAGGTTTGGAGCCGAATACGC ACACATTTCCCTTCGTTCTCAAGTCCTGCGCGAAATCGGGGAACACAAAAGAGGGTAAACAGATTCATGGACATGTTCTGAAGCTGGGTGTTGAGAATAA TGCATTTGTCCATACTTCTTTGATTAATATGTATGCTCAGAATGGTGAAGTGGATTTTGCACGATTAGTGTTTGACAGAAGTCCTAGGAGAGATGTTATA TCGTGTACGGCTTTGATGAATGGCTACTGTGCGGGTGGGCTTATGGAAGAAGCCCGTAAGCTGTTCGACGAAATACCTATTCAAGATGTAGTGTCGTGGA ATGCTATGATTTCAGGCTATGTCCATAGTGGCCTATTTGAAGAGGCATTAGAATTCTTTGGTGAGATGGTTAGAGCGGGAATTACCCCGAATGTGAGCAC TATGCTCTCTGTCCTTTCAGCTTGTGCACAATCTGGATCTCTTGAATTAGGCAATTGGGTTCAGTCTTGGATTGAGGATCACGGCCTAGGATCAAATCTG AGGCTTCTTAATGGTCTTGTTGATATGTACGCTAAGTGTGGAGATCTCGGAAGAGCTAAGAGCATTTTCGATAACATTGGAACCAAGAATGTTGTCTCAT GGAATGTTATGATTGGCGGGTATAACTGTAGGGGCTGCTATAAGGAATCACTTGAGATTTTTAGGCAGATGCTGCAATCAAATATGGAGCCTAATGAGGT AACCTTGGTTAGTGTTCTTCCAGCTGTTGCTAACTTGGGTGCTCTTAGTCTTGGGAAATGGATTCATGCTCATATAGACAAGAATAACAACAACTTCCGG TTGTCTAATAATGCTCTATCCACAAGCCTTATTGACATGTATGCAAAATGTGGTAATATCGTGGCAGCCACACATATCTTTGATACCCTGGATTCTAAGA ACCTGGCTTGTTGGAATGCAATGATATCTGGGTTCGCTATGCACGGACTTGCAGACATGGCCCTCGAGCTTCTCTCTACAATGATTGACCAAGGTTTCAT ACCAGATGATATTACCTTCGTCGGTGTATTGTCTGCTTGTAACCATGGTGGTTTTGTCGATCTTGCCCGCCACTACTTTATTTCAATGGTCAAAGATTAT AACGTTTCTCCTAAACTACAACACTATGGTTGCATGATTGATCTTCTAGGCAAAGCAGGGTTGCTTGATGAAGCAGAGAATTTGATTAAGGACATGGAAA TGCATCCAGATGGGGCCATCTGGGGTTCTATACTTGGAGCATGTAGACTTCATGGACGAGTGGAATTGGCGGAATTGGCCGCCAAGCATGTTTTCCAGTT AGAGCCTGAAAATATTGGAGCTTATGTGCTCTTGTCAAACATTTATGCAGGAGCTGGAAGATGGGATGACGTTGCGAAAATAAGAACAAAGATCAATGAT GAAGGAATGAAGAAAGTTCCTGGTTGTAGTTCTATTGAGGTGGATAGCGTGGTTCATGAGTTTCTAGTTTATGACAAAACACATTCTCAGAGTGAGGAAA TCTACAAGATGGTGGATGAGATAGATTTTCTCCTGGAGATATCTGGGTTCGTACCGGATACATCTGAGGTGTTATACGATATGGACGAGGATTGGAAGCA AGAGGCTTTGAGGCATCATAGTGAGAAGTTAGCTATTGCTTTTGGTTTGATAAGTACAAAGCCAGGAACCACTATAAGAATAGTGAAGAATCTGCGTGTC TGTGGGAATTGTCATTCAGCAACTAAGCTGATATCCAAGATCTTTAACAGAGAAATCATTGCTCGAGACAGAAATCGTTTCCACCATTTCAAAGACGGGC TCTGTTCGTGTAATGACTACTGGTGA
AA sequence Show only first row Show all	>Lus10033026 pacid=23176997 polypeptide=Lus10033026 locus=Lus10033026.g ID=Lus10033026.BGIv1.0 annot-version=v1.0 MAAFSSPPSIAVSTTAIPHFLPFSDPPYQLLENHPSLALLSTCKNHRTFKEIHSLVIRTGLHNTQFCLSKLIEFCAVSPFGDLAYALSLFESVENPDQII WNHIIRGFALGESPILAVKFYIRMMVSGLEPNTHTFPFVLKSCAKSGNTKEGKQIHGHVLKLGVENNAFVHTSLINMYAQNGEVDFARLVFDRSPRRDVI SCTALMNGYCAGGLMEEARKLFDEIPIQDVVSWNAMISGYVHSGLFEEALEFFGEMVRAGITPNVSTMLSVLSACAQSGSLELGNWVQSWIEDHGLGSNL RLLNGLVDMYAKCGDLGRAKSIFDNIGTKNVVSWNVMIGGYNCRGCYKESLEIFRQMLQSNMEPNEVTLVSVLPAVANLGALSLGKWIHAHIDKNNNNFR LSNNALSTSLIDMYAKCGNIVAATHIFDTLDSKNLACWNAMISGFAMHGLADMALELLSTMIDQGFIPDDITFVGVLSACNHGGFVDLARHYFISMVKDY NVSPKLQHYGCMIDLLGKAGLLDEAENLIKDMEMHPDGAIWGSILGACRLHGRVELAELAAKHVFQLEPENIGAYVLLSNIYAGAGRWDDVAKIRTKIND EGMKKVPGCSSIEVDSVVHEFLVYDKTHSQSEEIYKMVDEIDFLLEISGFVPDTSEVLYDMDEDWKQEALRHHSEKLAIAFGLISTKPGTTIRIVKNLRV CGNCHSATKLISKIFNREIIARDRNRFHHFKDGLCSCNDYW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10033026 [exp]	0	1
AT1G22700			Tetratricopeptide repeat (TPR)...		Lus10041265 [exp]	1.7	0.9319
AT5G27290			unknown protein		Lus10018966 [exp]	6.0	0.9052
AT1G01080			RNA-binding (RRM/RBD/RNP motif...		Lus10002676 [exp]	8.4	0.8918
AT1G06510			unknown protein		Lus10031459 [exp]	8.7	0.8366
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10029941 [exp]	9.5	0.9031
AT5G11580			Regulator of chromosome conden...		Lus10038724 [exp]	10.6	0.8841
AT4G15510			Photosystem II reaction center...		Lus10000352 [exp]	11.0	0.8939
AT4G01690		PPOX, HEMG1, PP...	Flavin containing amine oxidor...		Lus10007194 [exp]	11.4	0.8762
AT2G47210	MYB		myb-like transcription factor ...		Lus10034713 [exp]	12.3	0.8712
AT1G20810			FKBP-like peptidyl-prolyl cis-...		Lus10016037 [exp]	15.5	0.8828

Compare expression of checked genes

Lus10033026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.