Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26700 536 / 0 PID2 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT5G47750 411 / 4e-138 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT4G26610 402 / 1e-135 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G55910 399 / 1e-134 D6PK D6 protein kinase (.1) AT5G40030 398 / 2e-134 Protein kinase superfamily protein (.1) AT2G34650 385 / 3e-130 ABR, PID PINOID, ABRUPTUS, Protein kinase superfamily protein (.1) AT2G44830 393 / 4e-129 Protein kinase superfamily protein (.1) AT5G03640 396 / 2e-128 Protein kinase superfamily protein (.1) AT1G79250 380 / 1e-126 AGC1.7 AGC kinase 1.7 (.1.2) AT3G52890 390 / 3e-126 KIPK KCBP-interacting protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030051 [exp] 841 / 0 AT2G26700 577 / 0.0 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10016629 [exp] 412 / 4e-138 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10038753 [exp] 404 / 3e-135 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10039105 [exp] 402 / 1e-134 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10014501 [exp] 396 / 5e-133 AT5G40030 671 / 0.0 Protein kinase superfamily protein (.1) Lus10042911 [exp] 395 / 6e-133 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10032185 [exp] 396 / 1e-132 AT5G40030 669 / 0.0 Protein kinase superfamily protein (.1) Lus10022272 [exp] 398 / 2e-132 AT3G27580 684 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Lus10036150 [exp] 382 / 2e-129 AT2G34650 521 / 0.0 PINOID, ABRUPTUS, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G093400 [exp] 620 / 0 AT2G26700 551 / 0.0 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.016G004900 [exp] 410 / 1e-137 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.006G003800 [exp] 405 / 1e-135 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.014G047500 [exp] 409 / 2e-135 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.017G075400 [exp] 401 / 3e-135 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.002G137700 [exp] 407 / 1e-134 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.001G344600 [exp] 399 / 2e-132 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.006G114900 [exp] 399 / 3e-129 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Potri.008G080600 [exp] 380 / 4e-126 AT1G79250 684 / 0.0 AGC kinase 1.7 (.1.2) Potri.009G146700 [exp] 388 / 6e-126 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10033029 pacid=23177021 polypeptide=Lus10033029 locus=Lus10033029.g ID=Lus10033029.BGIv1.0 annot-version=v1.0 ATGGCATCCATAGCTCATCGAGATGAATCCGACTACGACAGCAGCTCGTCCTCCATCACTGTCCCGGACTCTAGCCGGAGCTGGATGAGTAACCTCAGCT TCGGCAGCCGGCGAAGTTCCATCTCCATCCCTTCCTCTTTAGCCGAATCACAAAACCCACTCCTTTACACTTCCCACAAGCCCCACAAGTCCAACCAAGC TGCCTGGCAGGCCATTAAGCGCCTCCAGGCTGCCGGAGGATATGGCCGCGGTGTCGGTCTAGACCACTTCCGCCTCCTCCGCCGACTGGGGAGTGGGGAT TTGGGTAATGTCTACCTCTGCCAGATAAGGAACCCTGTTGTGGGTCTGCCTCAGTGCTTCTATGCCATGAAAGTTGTGGACAAAGAAGCGCTTGCTATTA GAAACAAGGTGCAGAGAGCTGATATGGAGAAGGAGATTTTGGGGATGCTTGATCACCCTTTTCTTCCTACTCTTTATGCCGAGTTTGAAGCTTCTCATTA CTCCTGCTTGGTTATGGAGTATTGTCCCGGCGGTGATTTGTACGCCGCCAGGCAACGCCAGCCTGGGAAGCGCTTCCTCATTTCCTCCGCCAAGTTTTAT GCAGCGGAAACATTAGTGGCGTTGGAATATCTACACATGATGGGAATAGTTTACAGAGATTTGAAGCCAGAGAACGTACTTGTTAGAGAAGATGGCCACA TCATGCTCTCCGATTTCGACCTCTGCCTCAAATGTGACGTTGTTCCCAAGCTCTTACGCCGGCCCAAATCCTCCGTCTCCGTCGACGACTATGATGACGA CGACGAAATCGACGGCGGCAGCAACAGTAATGGAAGAGAAGCATGCTTCACACCATCATGCGCCACGCCAATTCGGCCAGTCCTGTCCTGTTTCACATCG AGAAAGAAACAGCGTTCAGTCAGGACAATCGTCGAACACGTGGAGTGCACTCAAAACAGCACCCATCGCGGCCATCACAATCACCGTCGTCTCAACCTCG ACGCTGAATTAATCGCCGAACCAATCAACGCCAGGTCGAAATCTTTTGTCGGAACGCACGAGTACTTAGCTCCGGAAGTGATCTCCGGGCAGGGCCACGG AAGCGCGGTGGACTGGTGGACCCTGGGTGTGTTTCTGTACGAGATGCTTTACGGGAGGACGCCGTTCAAGGGGGAAAACAATGAGAGGACGCTAATTAAC ATCCTAAAACAGCCCTTGGCGTTTCCCAGAGGGGTCGGAGCCGTAACGGAGGAGATGTTGAGGGTTCAGGACCTGATAAGCAAGTTGCTGGTGAAGAATC CGAAGAAGAGGCTAGGGAGCTTAAAGGGCGCGGCGGAGATTAAGCGCCACGAGTTTTTCAAAGGGGTTAATTGGGCGCTGATTCGGTCGGTACGGCCACC GGAGGTTCCCAGGGAGGGTCGCTGGAAAATAATCGACAGTCGGGTCCCGAAGTTGATGAGCCGGAGGGAGAGGGAAGCGCCGTTTCAGATCCCGGCGGCT CGTGAGCATCATCAACATTTTGATTACTTTTAA
AA sequence Show only first row Show all	>Lus10033029 pacid=23177021 polypeptide=Lus10033029 locus=Lus10033029.g ID=Lus10033029.BGIv1.0 annot-version=v1.0 MASIAHRDESDYDSSSSSITVPDSSRSWMSNLSFGSRRSSISIPSSLAESQNPLLYTSHKPHKSNQAAWQAIKRLQAAGGYGRGVGLDHFRLLRRLGSGD LGNVYLCQIRNPVVGLPQCFYAMKVVDKEALAIRNKVQRADMEKEILGMLDHPFLPTLYAEFEASHYSCLVMEYCPGGDLYAARQRQPGKRFLISSAKFY AAETLVALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLCLKCDVVPKLLRRPKSSVSVDDYDDDDEIDGGSNSNGREACFTPSCATPIRPVLSCFTS RKKQRSVRTIVEHVECTQNSTHRGHHNHRRLNLDAELIAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFLYEMLYGRTPFKGENNERTLIN ILKQPLAFPRGVGAVTEEMLRVQDLISKLLVKNPKKRLGSLKGAAEIKRHEFFKGVNWALIRSVRPPEVPREGRWKIIDSRVPKLMSRREREAPFQIPAA REHHQHFDYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10033029 [exp]	0	1
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10026141 [exp]	1.0	0.8277
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10030051 [exp]	3.0	0.7952
AT1G60590			Pectin lyase-like superfamily ...		Lus10030604 [exp]	4.7	0.8079
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10041321 [exp]	5.9	0.7616
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10029950 [exp]	7.2	0.7860
AT2G22140		ATEME1B	essential meiotic endonuclease...		Lus10006798 [exp]	7.5	0.7375
					Lus10027544 [exp]	11.4	0.7228
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Lus10011960 [exp]	11.7	0.7472
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10004302 [exp]	37.6	0.7435
AT5G52230		MBD13	methyl-CPG-binding domain prot...		Lus10038869 [exp]	38.2	0.7237

Compare expression of checked genes

Lus10033029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.