Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17486 225 / 4e-74 PPPDE putative thiol peptidase family protein (.1.2) AT5G47310 212 / 7e-69 PPPDE putative thiol peptidase family protein (.1) AT1G47740 202 / 2e-64 PPPDE putative thiol peptidase family protein (.1.2) AT5G25170 189 / 5e-60 PPPDE putative thiol peptidase family protein (.1) AT2G25190 181 / 2e-56 PPPDE putative thiol peptidase family protein (.1) AT1G80690 177 / 4e-55 PPPDE putative thiol peptidase family protein (.1) AT4G31980 185 / 5e-54 unknown protein AT4G25680 72 / 1e-14 PPPDE putative thiol peptidase family protein (.1) AT4G25660 70 / 7e-14 PPPDE putative thiol peptidase family protein (.1) AT3G07090 55 / 9e-09 PPPDE putative thiol peptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013657 [exp] 436 / 3e-157 AT4G17486 243 / 1e-81 PPPDE putative thiol peptidase family protein (.1.2) Lus10043293 [exp] 337 / 8e-118 AT4G17486 243 / 3e-81 PPPDE putative thiol peptidase family protein (.1.2) Lus10019437 [exp] 329 / 8e-115 AT4G17486 241 / 1e-80 PPPDE putative thiol peptidase family protein (.1.2) Lus10040170 [exp] 231 / 3e-76 AT4G17486 283 / 9e-98 PPPDE putative thiol peptidase family protein (.1.2) Lus10004755 [exp] 216 / 9e-71 AT4G17486 273 / 2e-93 PPPDE putative thiol peptidase family protein (.1.2) Lus10007844 [exp] 211 / 9e-69 AT4G17486 277 / 3e-95 PPPDE putative thiol peptidase family protein (.1.2) Lus10004372 [exp] 207 / 8e-64 AT5G47310 244 / 1e-77 PPPDE putative thiol peptidase family protein (.1) Lus10032708 [exp] 197 / 5e-63 AT1G47740 357 / 1e-125 PPPDE putative thiol peptidase family protein (.1.2) Lus10003951 [exp] 196 / 2e-62 AT1G47740 358 / 8e-126 PPPDE putative thiol peptidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G070600 [exp] 318 / 1e-110 AT4G17486 235 / 1e-78 PPPDE putative thiol peptidase family protein (.1.2) Potri.006G154400 [exp] 313 / 4e-109 AT4G17486 220 / 8e-73 PPPDE putative thiol peptidase family protein (.1.2) Potri.003G080300 [exp] 242 / 1e-80 AT5G47310 295 / 9e-102 PPPDE putative thiol peptidase family protein (.1) Potri.001G154400 [exp] 239 / 8e-80 AT5G47310 308 / 4e-107 PPPDE putative thiol peptidase family protein (.1) Potri.002G134200 [exp] 202 / 8e-65 AT1G47740 346 / 3e-121 PPPDE putative thiol peptidase family protein (.1.2) Potri.004G151200 [exp] 199 / 1e-63 AT1G47740 335 / 1e-116 PPPDE putative thiol peptidase family protein (.1.2) Potri.018G021700 [exp] 198 / 2e-63 AT5G25170 301 / 2e-104 PPPDE putative thiol peptidase family protein (.1) Potri.014G042300 [exp] 198 / 4e-63 AT1G47740 339 / 2e-118 PPPDE putative thiol peptidase family protein (.1.2) Potri.T126004 [exp] 196 / 2e-62 AT1G47740 337 / 2e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.009G113168 [exp] 195 / 7e-62 AT1G47740 335 / 6e-117 PPPDE putative thiol peptidase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF05903 [flax] [poplar] Peptidase_C97 PPPDE putative peptidase domain
Representative CDS sequence Show only first row Show all	>Lus10033030 pacid=23177027 polypeptide=Lus10033030 locus=Lus10033030.g ID=Lus10033030.BGIv1.0 annot-version=v1.0 ATGGAGGTTGGAATCGCTTCGATGACTTCGAGCTCCAGGAAGGAGAATTTGAACGATAGCGGTGGAACCCTTGTGGTTCTGAATGTCTACGATCTCACCC CTGTCAACAATTATGCTTATTGGTTCGGTTTCGGAATCTTCCATTCTGGCATTGAAGGCATGTTTCTCTCTCTTCTTCTTCCTAATTCCTTCCTCCATTT CCTCTTTTTGATTTGCTCAGATGTGTCGAGGGTTTCGGTTCATGGCAAGGAGTATGGATTTGGAGCTCATGACTTCCCAGTTAGTGGAGTTTTTGAAGTT GAGCCAAGAAACTGCCCAGGTTTCATTTACAGAAGTTCCATCCCACTGGGCCACATAACAATGCCTCCTACCGAGTTCAGGACGTTTATAGAGAGCATGG CTTCTGAGTATCATGGAGACACGTACCACCTTATCTCCAAGAACTGCAACCATTTTACCGATGACGTATGCTCCAGGCTGACTGGAAAGAAAATACCAGG ATTTGTGAATCGGCTTGCACGGCTAGGAGCTCTGTGCAGTTGTTTGCTTCCTGAAAGCCTTCAAGTAACTACAGTGAAACAGCTGCCTGAACACCATGAC TTGTTGGAAGATGGAAGCGACTCGCAGACATCAGCCACCTTAACCAATGAATCAACGGAAATCGAAGATACAGAACAAGAGAGGCACCTGCTGTCACCAA GTCGTGGAGCGGGAGAAGTGTCATTTGTGAAAGAAAGAAGTCCAACGGAAGTTCAGCTACTTCATTGA
AA sequence Show only first row Show all	>Lus10033030 pacid=23177027 polypeptide=Lus10033030 locus=Lus10033030.g ID=Lus10033030.BGIv1.0 annot-version=v1.0 MEVGIASMTSSSRKENLNDSGGTLVVLNVYDLTPVNNYAYWFGFGIFHSGIEGMFLSLLLPNSFLHFLFLICSDVSRVSVHGKEYGFGAHDFPVSGVFEV EPRNCPGFIYRSSIPLGHITMPPTEFRTFIESMASEYHGDTYHLISKNCNHFTDDVCSRLTGKKIPGFVNRLARLGALCSCLLPESLQVTTVKQLPEHHD LLEDGSDSQTSATLTNESTEIEDTEQERHLLSPSRGAGEVSFVKERSPTEVQLLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17486			PPPDE putative thiol peptidase...		Lus10033030 [exp]	0	1
AT4G17190		FPS2	farnesyl diphosphate synthase ...		Lus10022545 [exp]	1.0	0.9169
AT5G27450		MVK, MK	mevalonate kinase (.1.2.3)		Lus10031513 [exp]	3.0	0.8797
AT1G20770			unknown protein		Lus10013217 [exp]	4.0	0.9052
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10033636 [exp]	4.9	0.8933
AT1G26300			BSD domain-containing protein ...		Lus10019194 [exp]	5.3	0.8733
AT5G15220			Ribosomal protein L27 family p...		Lus10007170 [exp]	6.5	0.8964
AT5G17620			unknown protein		Lus10013643 [exp]	8.3	0.8631
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10011145 [exp]	8.9	0.8791
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10017682 [exp]	10.0	0.8922
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Lus10039931 [exp]	11.2	0.8842

Compare expression of checked genes

Lus10033030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.