Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20050 484 / 1e-169 Protein kinase superfamily protein (.1) AT4G32300 308 / 1e-96 SD2-5 S-domain-2 5 (.1) AT1G34300 288 / 7e-89 lectin protein kinase family protein (.1) AT2G19130 283 / 6e-87 S-locus lectin protein kinase family protein (.1) AT5G24080 271 / 6e-86 Protein kinase superfamily protein (.1) AT4G00340 257 / 2e-77 RLK4 receptor-like protein kinase 4 (.1) AT5G35370 251 / 8e-75 S-locus lectin protein kinase family protein (.1) AT5G65530 213 / 9e-64 Protein kinase superfamily protein (.1) AT5G38280 218 / 1e-63 PR5K PR5-like receptor kinase (.1) AT1G70250 219 / 2e-63 receptor serine/threonine kinase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013659 [exp] 460 / 4e-163 AT5G20050 244 / 8e-79 Protein kinase superfamily protein (.1) Lus10002917 [exp] 312 / 5e-98 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10000249 [exp] 306 / 2e-95 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10028711 [exp] 295 / 9e-94 AT1G34300 704 / 0.0 lectin protein kinase family protein (.1) Lus10006052 [exp] 293 / 9e-91 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10039315 [exp] 284 / 5e-87 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10043391 [exp] 276 / 9e-85 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10033748 [exp] 275 / 2e-84 AT2G19130 711 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10042266 [exp] 263 / 6e-80 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G070800 [exp] 606 / 0 AT5G20050 516 / 0.0 Protein kinase superfamily protein (.1) Potri.013G115700 [exp] 302 / 3e-94 AT1G34300 939 / 0.0 lectin protein kinase family protein (.1) Potri.018G027300 [exp] 301 / 6e-94 AT4G32300 1012 / 0.0 S-domain-2 5 (.1) Potri.019G086200 [exp] 300 / 2e-93 AT1G34300 918 / 0.0 lectin protein kinase family protein (.1) Potri.019G086400 [exp] 296 / 5e-92 AT1G34300 904 / 0.0 lectin protein kinase family protein (.1) Potri.006G254600 [exp] 296 / 5e-92 AT4G32300 965 / 0.0 S-domain-2 5 (.1) Potri.019G086300 [exp] 295 / 2e-91 AT1G34300 847 / 0.0 lectin protein kinase family protein (.1) Potri.013G115800 [exp] 290 / 5e-90 AT1G34300 858 / 0.0 lectin protein kinase family protein (.1) Potri.015G026300 [exp] 286 / 5e-88 AT5G24080 684 / 0.0 Protein kinase superfamily protein (.1) Potri.019G119200 [exp] 284 / 2e-87 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10033032 pacid=23176977 polypeptide=Lus10033032 locus=Lus10033032.g ID=Lus10033032.BGIv1.0 annot-version=v1.0 ATGGAGAACAAGACGGTCAACATCCTTGCCTGCTCCACAATCGCCTTTCTCGTCATCATCATAATCGTTGCCCGAGTCTCCCTCAACCTCTCCCGGACAT TCTTCTTCATCGCCGGCGCCGATGTCGCCGTAATCCTCGCCGTCTTCTCCTGCCTCCTTATCAGGCGCCGCTACAATAACAGGAGCAAAATCCTCCAGAC TCAGATGGTCTCCGAAAACAAAGAACTCCGCATCGAGTACAGCTTCCTCCGCAAAGTCGCCGGCGTTCCCACCAAGTTCCGGCATCAAGAACTCGAGGAC GCCACCGAAAACTTCAAATCCTTTCTTGGAAGAGGATCTTCTGCTTCTGTCTTCAAAGGCGTGTTGAAAGACGGGACTGAAGTGGCTGTGAAGCGGATCG GGGCGGAAGAAAAGGGTGAAAAAGAGTTCAGATCTGAAGTCGCCGCCATAGCCAGCGTCCAACATCTCAACTTAGCGAGGCTCATTGGTTACTGCATCGT TCCTAGAGGTCCACGGTACATAGTGTACGAGTTTTTCCCCAATGGATCGCTCGATAGCTGGATTTTCCCTCAGAAGGATGAAATGCGCACCAGGTGTTTG ACATGGGATCTCAGGTACAGAGTAGCAATGGATGTGGCGAAAGCGTTGTGTTACCTCCATCACGACTGCCGGTCGAGGATTCTTCATCTGGACGTGAAGC CCGAAAACATCTTGCTGGACGAGAATCACCGAGCGATCGTCTCCGATTTCGGGCTGTCGAAGCTGATGAGGAGAGACGAGAGTAAAGTAATCACCAACAT AAGAGGGACAAGGGGGTATTTGGCTCCGGAATGGCTGTTGGAGCTAGGGATTTCGGAGAAATCGGACGTGTACAGCTACGGGATGGTGGTGCTGGAGATG ATCGGAGGGAGGCGAAACGTACGCCGGAGCACGAAATCGGGGAGGAGGAAGTGGGATTACTTTCCCAGGACTGTGGAGAAGACATTGAGGGAAGGAGGGA ATTTGATGGAGGTAGTGGATCGGAGGCTGGTAGAAAGCGGTGGCGACGGAGGAGGAATCGATGAGACGGAGCTGAGACGATTGGTCAATGTGGCGTTTTG GTGTATTCAGGAAGTGGCCCAGTTGAGACCTGCTATGGGAAGGGTGGTGGAGATGCTTGAAGGGAGAGTAGCGGTGGGTCAGCCACCGGAAACGAAGATG ATAGTGGTTGATATGTTGTCGATTGATGAAGAGTCGGTGGAAGATGAGATTAATCATAGGAGGTTGGTGGCGGTTCCGGTAGGACAAGGAGATGTAGATG ATAGCACTTCTGCTGCCGCTGTCGGGATGTCGAGTTCATTCACCATGTCGGTTCTCTCTGCCCGATAG
AA sequence Show only first row Show all	>Lus10033032 pacid=23176977 polypeptide=Lus10033032 locus=Lus10033032.g ID=Lus10033032.BGIv1.0 annot-version=v1.0 MENKTVNILACSTIAFLVIIIIVARVSLNLSRTFFFIAGADVAVILAVFSCLLIRRRYNNRSKILQTQMVSENKELRIEYSFLRKVAGVPTKFRHQELED ATENFKSFLGRGSSASVFKGVLKDGTEVAVKRIGAEEKGEKEFRSEVAAIASVQHLNLARLIGYCIVPRGPRYIVYEFFPNGSLDSWIFPQKDEMRTRCL TWDLRYRVAMDVAKALCYLHHDCRSRILHLDVKPENILLDENHRAIVSDFGLSKLMRRDESKVITNIRGTRGYLAPEWLLELGISEKSDVYSYGMVVLEM IGGRRNVRRSTKSGRRKWDYFPRTVEKTLREGGNLMEVVDRRLVESGGDGGGIDETELRRLVNVAFWCIQEVAQLRPAMGRVVEMLEGRVAVGQPPETKM IVVDMLSIDEESVEDEINHRRLVAVPVGQGDVDDSTSAAAVGMSSSFTMSVLSAR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20050			Protein kinase superfamily pro...		Lus10033032 [exp]	0	1
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10031932 [exp]	7.0	0.7124
AT1G13750			Purple acid phosphatases super...		Lus10036904 [exp]	9.3	0.7404
AT5G38060			unknown protein		Lus10009105 [exp]	16.0	0.7253
AT5G50460			secE/sec61-gamma protein trans...		Lus10012539 [exp]	17.2	0.7120
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10021852 [exp]	23.2	0.7268
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Lus10013100 [exp]	25.6	0.6762
AT2G41475			Embryo-specific protein 3, (AT...		Lus10019416 [exp]	28.0	0.7098
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Lus10021996 [exp]	29.0	0.6713
AT4G01897			unknown protein		Lus10038061 [exp]	34.9	0.6777
AT1G79400		ATCHX2	cation/H+ exchanger 2, cation/...		Lus10026155 [exp]	39.2	0.6312

Compare expression of checked genes

Lus10033032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.