Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63200 529 / 0 tetratricopeptide repeat (TPR)-containing protein (.1) AT3G04240 75 / 8e-14 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11540 56 / 9e-08 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G20000 44 / 0.0003 CDC27b, HBT HOBBIT, CDC27 family protein (.1) AT4G12400 43 / 0.0006 Hop3 Hop3, stress-inducible protein, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013661 [exp] 845 / 0 AT5G63200 801 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1) Lus10003113 [exp] 69 / 8e-12 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004779 [exp] 69 / 1e-11 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003576 [exp] 68 / 1e-11 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017009 [exp] 54 / 2e-07 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10021336 [exp] 54 / 3e-07 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10012968 [exp] 45 / 0.0001 AT2G20000 1126 / 0.0 HOBBIT, CDC27 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G092000 [exp] 564 / 0 AT5G63200 759 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1) Potri.019G025600 [exp] 77 / 2e-14 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G051400 [exp] 70 / 3e-12 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G208900 [exp] 59 / 1e-08 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G075700 [exp] 58 / 1e-08 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G164000 [exp] 50 / 5e-06 AT2G20000 1098 / 0.0 HOBBIT, CDC27 family protein (.1) Potri.018G086300 [exp] 45 / 0.0002 AT2G20000 1146 / 0.0 HOBBIT, CDC27 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10033033 pacid=23176956 polypeptide=Lus10033033 locus=Lus10033033.g ID=Lus10033033.BGIv1.0 annot-version=v1.0 ATGGATGAAATCCTGGATCTTCCAAGAGCTCATCCCGTGTCTGTGAAACAAGAGCTTGACGCCATGGGAGACAGCTCCAAGATGTTACAATCCTCCAAGA TTGTAATTCTCGCTGACCTCAATGCCAATCCTCCCGAAACAGACGCCTCCGACTCTGTCCAAGTCATTGCTGCCCCTGATATCCCCAGGTTGAATAATAA CGAGACTCAAGAGAAAGGGAGCAAAGATACGGATGGGGTGGAAGCTGAAGCTAAAAAATTCAACAAGCTAGGAAAGTGCCGGTCGAGAAGTAGTAAGGGA GATGCAGGGGGTTTGGTTCATGTTGCAAGGAAAATGCCTAAAAATGCTCATGCACATTTTATACTTGGCTTAATGTACCAAAGGTTGGGTCAGCCCCAGA AGGCAGTTTTAGCTTATGAGAAGGCGGAAGAGATCTTACTCCGTTGTGAGGTTGAGGTTGCCAGACCGGAATTGCTTTCTTTAGTTCAGGTTCACCATGC CCAGTGTATTCTCCTTGAGAATTTCCCCGACAGTAATCTTGATAAAGAACTTGGACCTGATGAACTCGGTCAAATCCTGTCTAAGTTGAAAGAATCGATG CATACGGATGTTAGGAAAGCAGCAATTTCGAATACACTGGGTTTGATACTTCTAAAATCTGGCCGTCTTAAGAATGCAATATCAGCCCTTTCATCTTTGT TGGCCGCTGCCCCTAACAATTTTGACTGCCTTGCAAATTTGGGCATTGCATACCTTCAAAGATTCACATTCGAGTATGGTCCCCTCTTTTGGATGCCAGG TGCCGGATCGCATGCTGGCAATGGAGCTTCCGTGGATCAGTTAGAAGCTGCCCATGTTGCAAAAGAATGTTTGTTGGCTTCATTGAAACTTGATCCTAAA GCGTCTCATGCATGGGGTAATCTTGCCAATGCATATTATATGACTGGTGACCACAAGAGCTCTAGCAAGTGCTTGGAGAAGGCTGCAAAACTGGAGCCTA ATTTCAACTATGCGGCTATTCTGCTGTGTAAATATGGATCAGTCATCGCAGGTGCCGGATCGCATGCTGGCAATGGAGCTTCCGTGGATCAGTTAGAAGC TGCCCATGTTGCAAAAGAATGTTTGTTGGCTTCATTGAAACTTGATCCTAAAGCGTCTCATGCATGGGGTAATCTTGCCAATGCATATTATATGACTGGT GACCACAAGAGCTCTAGCAAGTGCTTGGAGAAGGCAATAGGAGAGGATCCAGATGACGGTATACATTGGCATCAACTTGGGCTACATTGTCTTTGTTCAC GCAAGTTTGAAACTGCCCAAAAGTATCTAAAACTGGCCGTTGCTCGTTTAAGAGAATCAAGTTATGCGTGGTCGAATCTTGGTGTGTCCCTTCAATTGTG TGAAGAAGAGTCTTCACACGCTGAAGATGTGTACAAGCGATCCTTGTCACTGGCAACAGCGGAACAAGGACACGCAATATTTTCAAATCTAGGGAATCTG TACAGACAGCAGAAGAAGTATGAACGTGCCAAGGTGATGTTAACAAAGGCTCTTGAACTGAAACTAGGGTATGCACCTGCGTTCAACAATATGGGGCTTG TGTTTGTGGCTGAGGGTAGGTGGGAGGAGGCAGTGTTCTGTTTCGAAAAGGCCGTTGAGGGAGATCCATTGCTGGATGCAGCAAAGTCCAACATCATTAA GGCTACTTCTATCTCTAAATTGTGCGCCCGCCTCTCCTCCTGTCACCTGCACCGCTGA
AA sequence Show only first row Show all	>Lus10033033 pacid=23176956 polypeptide=Lus10033033 locus=Lus10033033.g ID=Lus10033033.BGIv1.0 annot-version=v1.0 MDEILDLPRAHPVSVKQELDAMGDSSKMLQSSKIVILADLNANPPETDASDSVQVIAAPDIPRLNNNETQEKGSKDTDGVEAEAKKFNKLGKCRSRSSKG DAGGLVHVARKMPKNAHAHFILGLMYQRLGQPQKAVLAYEKAEEILLRCEVEVARPELLSLVQVHHAQCILLENFPDSNLDKELGPDELGQILSKLKESM HTDVRKAAISNTLGLILLKSGRLKNAISALSSLLAAAPNNFDCLANLGIAYLQRFTFEYGPLFWMPGAGSHAGNGASVDQLEAAHVAKECLLASLKLDPK ASHAWGNLANAYYMTGDHKSSSKCLEKAAKLEPNFNYAAILLCKYGSVIAGAGSHAGNGASVDQLEAAHVAKECLLASLKLDPKASHAWGNLANAYYMTG DHKSSSKCLEKAIGEDPDDGIHWHQLGLHCLCSRKFETAQKYLKLAVARLRESSYAWSNLGVSLQLCEEESSHAEDVYKRSLSLATAEQGHAIFSNLGNL YRQQKKYERAKVMLTKALELKLGYAPAFNNMGLVFVAEGRWEEAVFCFEKAVEGDPLLDAAKSNIIKATSISKLCARLSSCHLHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63200			tetratricopeptide repeat (TPR)...		Lus10033033 [exp]	0	1
AT5G06780		AtEML2, ACK4	EMSY-like 2, Emsy N Terminus (...		Lus10021038 [exp]	2.2	0.8380
AT5G63200			tetratricopeptide repeat (TPR)...		Lus10013661 [exp]	6.0	0.7737
AT3G32940			RNA-binding KH domain-containi...		Lus10039188 [exp]	7.2	0.7690
AT2G26790			Pentatricopeptide repeat (PPR)...		Lus10005692 [exp]	7.3	0.7551
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10017026 [exp]	7.9	0.7902
AT2G41020			WW domain-containing protein (...		Lus10027285 [exp]	11.5	0.7357
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Lus10032571 [exp]	13.5	0.7538
AT4G34310			alpha/beta-Hydrolases superfam...		Lus10042665 [exp]	13.9	0.7032
AT5G51540			Zincin-like metalloproteases f...		Lus10031715 [exp]	14.0	0.7593
AT1G78930			Mitochondrial transcription te...		Lus10037301 [exp]	17.3	0.6673

Compare expression of checked genes

Lus10033033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.