Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48420 407 / 3e-143 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G39970 161 / 4e-47 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G45170 77 / 8e-16 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G21470 69 / 7e-13 ATFMN/FHY riboflavin kinase/FMN hydrolase (.1) AT1G56500 67 / 7e-12 haloacid dehalogenase-like hydrolase family protein (.1) AT4G11570 54 / 4e-08 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT4G25840 48 / 5e-06 GPP1 glycerol-3-phosphatase 1 (.1) AT5G57440 42 / 0.0002 GPP2, GS1 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G38740 40 / 0.0009 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013663 [exp] 591 / 0 AT3G48420 427 / 4e-151 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10000633 [exp] 168 / 6e-50 AT4G39970 427 / 1e-151 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10023149 [exp] 167 / 2e-49 AT4G39970 423 / 4e-150 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10016820 [exp] 142 / 9e-43 AT3G48420 105 / 4e-29 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10018280 [exp] 87 / 1e-18 AT5G45170 410 / 1e-136 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10040631 [exp] 83 / 1e-17 AT5G45170 427 / 3e-149 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10018906 [exp] 69 / 6e-13 AT4G21470 556 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10028605 [exp] 66 / 5e-12 AT4G21470 558 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10029840 [exp] 65 / 3e-11 AT1G56500 1528 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G088500 [exp] 440 / 3e-156 AT3G48420 434 / 5e-154 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.007G095200 [exp] 167 / 2e-49 AT4G39970 439 / 3e-156 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.014G003916 [exp] 81 / 2e-19 AT3G48420 87 / 2e-22 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.015G112500 [exp] 86 / 1e-18 AT5G45170 386 / 2e-133 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.002G077200 [exp] 70 / 3e-13 AT4G21470 561 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.005G183400 [exp] 67 / 3e-12 AT4G21470 575 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.013G007800 [exp] 63 / 8e-11 AT1G56500 1489 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Potri.018G092500 [exp] 57 / 4e-09 AT5G57440 398 / 2e-142 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G104366 [exp] 56 / 1e-08 AT4G11570 494 / 9e-176 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.003G127100 [exp] 56 / 1e-08 AT4G11570 493 / 2e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10033034 pacid=23177041 polypeptide=Lus10033034 locus=Lus10033034.g ID=Lus10033034.BGIv1.0 annot-version=v1.0 ATGGCGTCGGCGACTGTCTCTCTTTCATTCCTGCCGTTTGATTCCATTGCTTCCCCAAATGTTAAGCGGACTTCAATTTTCAAATTCATTTGGTCGCATG AATCCAATTTATCGTCCTCAATGACGGGTAGGAGGATTTGTGTCAGCAGAAGCATCCGCAAGTCAGGTGCAGCTCGGGTAACTTGGTTGACGGCGACTGC GGCTGCTTCGTCTTCTCCTTCACCTACGGCTTTGCCTTCTGCCCTACTATTCGACTGCGACGGCGTGCTCGTCGATACTGAAAAGGACGGCCACAGGGTT TCCTTCAACGACACTTTCGATGAAAAGGAATTGGGGGTCACTTGGGACGTGGAGTTGTATGGAGAGTTGTTGAAAATTGGAGGTGGAAAAGAAAGGATGA CAACATACTTCAATAAAGTTGGGTGGCCAGAGAATGCTCCAAAGAGTGAAGAGGAAAGGAAAGCTTTCATTGCTTCACTTCATAAAAGGAAGACAGAGTT GTTCATGGCTCTAATTGAGAAGAGATTACTGCCTCTACGTCCTGGGGTTGCAAAGCTGATTGATCAGGCAATGGGAAAAGGGGTGCCTGTTGCTGTATGC AGCACCTCCAATGAGAAAGCGGTTTCTGCCATAGTCTCCTACTTGTTGGGACCTGAACGTGCACAGAAGATGAAGATATTTGCTGGAGATGTAGTCCCTA GGAAAAAGCCTGATCCAGCAATTTATACACTAGCAGCCACCACACTAGGGGTAGATCCTCAAAGCTGCGTAGTAATAGAGGACAGTGGAATAGGACTTGC AGCAGCTAAAGCAGCAGGGATGAAATGTATAATCACAAAGAGCGGGTACACAGCTGAGGAGGACTTCTTGAATGCAGACGCAGTGTTTGATTTCATTGGA GACCCACCAGAAGAACGATTTGACTTTGACTTCTGTGCTAGCCTTGTTGAGAAGCAATATGTGAGCTAA
AA sequence Show only first row Show all	>Lus10033034 pacid=23177041 polypeptide=Lus10033034 locus=Lus10033034.g ID=Lus10033034.BGIv1.0 annot-version=v1.0 MASATVSLSFLPFDSIASPNVKRTSIFKFIWSHESNLSSSMTGRRICVSRSIRKSGAARVTWLTATAAASSSPSPTALPSALLFDCDGVLVDTEKDGHRV SFNDTFDEKELGVTWDVELYGELLKIGGGKERMTTYFNKVGWPENAPKSEEERKAFIASLHKRKTELFMALIEKRLLPLRPGVAKLIDQAMGKGVPVAVC STSNEKAVSAIVSYLLGPERAQKMKIFAGDVVPRKKPDPAIYTLAATTLGVDPQSCVVIEDSGIGLAAAKAAGMKCIITKSGYTAEEDFLNADAVFDFIG DPPEERFDFDFCASLVEKQYVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48420			Haloacid dehalogenase-like hyd...		Lus10033034 [exp]	0	1
AT3G48420			Haloacid dehalogenase-like hyd...		Lus10016820 [exp]	1.0	0.9857
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10021496 [exp]	1.4	0.9619
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10028073 [exp]	2.4	0.9591
AT3G61080			Protein kinase superfamily pro...		Lus10041374 [exp]	3.5	0.9518
AT1G08380		PSAO	photosystem I subunit O (.1)		Lus10013310 [exp]	6.3	0.9550
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Lus10013789 [exp]	7.5	0.8935
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10020296 [exp]	9.3	0.9059
AT2G20260		PSAE-2	photosystem I subunit E-2 (.1)		Lus10022846 [exp]	9.5	0.9536
AT4G16410			unknown protein		Lus10003907 [exp]	10.9	0.9496
AT4G28290			unknown protein		Lus10031644 [exp]	11.7	0.8861

Compare expression of checked genes

Lus10033034 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.