Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032711 [exp] 94 / 6e-24 ND / Lus10029774 [exp] 77 / 1e-16 AT2G34900 378 / 5e-130 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Lus10042803 [exp] 76 / 2e-16 AT2G34900 362 / 3e-123 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Lus10010599 [exp] 55 / 2e-09 ND / Lus10040367 [exp] 53 / 2e-08 AT5G02950 209 / 8e-56 Tudor/PWWP/MBT superfamily protein (.1) Lus10003491 [exp] 44 / 3e-05 AT1G65470 635 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G043000 [exp] 45 / 8e-06 AT2G34900 341 / 2e-115 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) Potri.010G219200 [exp] 41 / 0.0002 AT2G34900 333 / 2e-112 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033036 pacid=23176981 polypeptide=Lus10033036 locus=Lus10033036.g ID=Lus10033036.BGIv1.0 annot-version=v1.0 ATGAGTAAGTTGCCTAATTGGGAGTTCATTTCATCTCTTTCTCAAGATTATGGAATAGTGCTTGTTGTATGGGGTAGGGGAGTAAAGAAATGGAGCATCG GAGCTACTTATGAGCACGATTGTAATCCAGGGCAGCCAAGAAAAATTGTTGAAACTAAGGAAGATGTTGCTCCATATTCAGAGTCGAAACTGGAATCTGC TTTAGCAGAGGAAGCACAAGTGGTCGTGGTTAAGGATGACAGTTCATGTCCTCCATGTGAAGCAACAACTGGTGATCCTAGGGAGAAGGAAGGGGGACTT GCATTTATAGTTATTGGAGACAGAAGGGACTTAACTTCATGGCTAGAGCTTGAGAGCAAGGTCAATGAAGTTGAACAGTTCTACTCGAGCCTAAGAAAGA AGCAGCAGCAGATAGGTTCAAAAGGGAGTTTGGCTGTGAAAGAGAAGGAGAAGCAGGCCCTTAGCATCAGGAAGCAACATCAAGAGGCTTGTAAGCAAGA ATCCGTCACTGCTAAGAGAATGTAG
AA sequence Show only first row Show all	>Lus10033036 pacid=23176981 polypeptide=Lus10033036 locus=Lus10033036.g ID=Lus10033036.BGIv1.0 annot-version=v1.0 MSKLPNWEFISSLSQDYGIVLVVWGRGVKKWSIGATYEHDCNPGQPRKIVETKEDVAPYSESKLESALAEEAQVVVVKDDSSCPPCEATTGDPREKEGGL AFIVIGDRRDLTSWLELESKVNEVEQFYSSLRKKQQQIGSKGSLAVKEKEKQALSIRKQHQEACKQESVTAKRM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10033036 [exp]	0	1
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Lus10039974 [exp]	15.5	0.6072
AT5G47460			Pentatricopeptide repeat (PPR)...		Lus10028953 [exp]	17.5	0.6397
AT1G68100		IAR1	IAA-ALANINE RESISTANT 1, ZIP m...		Lus10026186 [exp]	29.2	0.6333
AT1G64160			Disease resistance-responsive ...		Lus10028749 [exp]	58.3	0.5174
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004518 [exp]	68.8	0.5671
AT5G64030			S-adenosyl-L-methionine-depend...		Lus10033481 [exp]	72.4	0.5486
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10038285 [exp]	90.7	0.5482
					Lus10015575 [exp]	92.7	0.5343
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Lus10003446 [exp]	110.2	0.4986

Compare expression of checked genes

Lus10033036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.