Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63180 634 / 0 Pectin lyase-like superfamily protein (.1) AT1G67750 613 / 0 Pectate lyase family protein (.1) AT4G24780 610 / 0 Pectin lyase-like superfamily protein (.1.2) AT3G27400 574 / 0 Pectin lyase-like superfamily protein (.1) AT4G13710 572 / 0 Pectin lyase-like superfamily protein (.1.2) AT3G24670 543 / 0 Pectin lyase-like superfamily protein (.1) AT3G07010 540 / 0 Pectin lyase-like superfamily protein (.1) AT1G04680 540 / 0 Pectin lyase-like superfamily protein (.1) AT3G24230 521 / 0 Pectate lyase family protein (.1) AT5G48900 521 / 0 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036946 [exp] 594 / 0 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022310 [exp] 585 / 0 AT5G63180 626 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014887 [exp] 581 / 0 AT5G63180 620 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011400 [exp] 579 / 0 AT1G67750 623 / 0.0 Pectate lyase family protein (.1) Lus10006456 [exp] 576 / 0 AT1G67750 625 / 0.0 Pectate lyase family protein (.1) Lus10023679 [exp] 563 / 0 AT4G13710 729 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011758 [exp] 561 / 0 AT4G13710 703 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10038157 [exp] 555 / 0 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10022817 [exp] 554 / 0 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G087800 [exp] 665 / 0 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 654 / 0 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G339500 [exp] 616 / 0 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.008G182200 [exp] 614 / 0 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.010G051800 [exp] 603 / 0 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.001G052300 [exp] 562 / 0 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.003G175900 [exp] 553 / 0 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.002G238800 [exp] 547 / 0 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G178100 [exp] 543 / 0 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.006G122000 [exp] 469 / 1e-163 AT3G53190 647 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10033037 pacid=23177020 polypeptide=Lus10033037 locus=Lus10033037.g ID=Lus10033037.BGIv1.0 annot-version=v1.0 ATGGGTTATCCCACATTGCTGCTCTTCTTCTTCATTCTCAGCTTCTCTTTCCTTTCCTCTTCCCTCATTTACTCCTCCCATGTCCATGATCCTGAGCTCG TTGTACAAGAGGTACATCGACTGTATGCTGAATTTGTCCAGTTGGGGCTCTGTGTTTGGGTGGGCAGGGCAATCAACGAGTCAAGGAGGAATCTGGGCTA CTTATCATGCGGGTCAGGCAACCCGATCGACGACTGCTGGAGGTGCGACCCCAACTGGGAAAAGAACCGACAACGTCTAGCAGACTGCGCCATCGGCTTC GGAAAAAATGCAATTGGCGGCAGAGATGGCAGGATCTACGTGGTCACCGACCCAAGCGACAACGACGTCGTTAACCCGAAACCAGGGACCCTCCGTCACG CCGTTATCCAGGACGAGCCACTGTGGATAATCTTCCAACGTGACATGACAATCCGTCTAAAGGAAGAGCTGATAATGAACTCATTCAAAACCATAGACGG CAGAGGATCCAGCGTCCACATCGCAGGAGGACCCTGCATCACCGTCCAATTCGTGACCAATATAATCATCCACGGGATACACATCCACGACTGCAAGCAA GGCGGGAACACCAACGTGCGGGACTCCCCACGGCATTACGGGTGGAGGACGATATCGGACGGCGATGGCGTGTCCATCTTTGGTGGGAGCCACGTGTGGG TTGATCATTGCTCTTTAGCCAACTGTAACGACGGCCTGATTGACGCGATCCATGGGTCCACAGCGATTACAATCTCCAACAATTACATGACCCACCACGA CAAAGTCATGTTGCTGGGACACAGTGACACGTATACGCAGGACAAGAACATGCAGGTCACCATTGCCTTTAATCACTTTGGGGAAGGTCTCGTTCAGAGA ATGCCTAGGTGTAGGCATGGGTATTTCCATGTGGTCAACAATGACTACACACATTGGGAAATGTATGCCATTGGAGGGAGTGCTAATCCAACCATCAACA GTCAAGGCAATAGATTCGTTGCTCCAGATATTAGGTTTAGCAAAGAGGTGACGAAGCACGAAGATGCACCGGAGAGCGAGTGGAAGAATTGGAATTGGAG ATCGGAAGGGGACATGTTGATGAATGGGGCATTTTTTACGGCATCGGGAGCAGGGGCATCATCATCAAGCTATGCAAAGGCTTCGAGTTTAGGAGCGAGG CCATCTTCACTTGTGGGTACAATTACTATGGCATCCGGTGCTCTCAATTGCAGGAGAGGCTCTCGTTGCTAG
AA sequence Show only first row Show all	>Lus10033037 pacid=23177020 polypeptide=Lus10033037 locus=Lus10033037.g ID=Lus10033037.BGIv1.0 annot-version=v1.0 MGYPTLLLFFFILSFSFLSSSLIYSSHVHDPELVVQEVHRLYAEFVQLGLCVWVGRAINESRRNLGYLSCGSGNPIDDCWRCDPNWEKNRQRLADCAIGF GKNAIGGRDGRIYVVTDPSDNDVVNPKPGTLRHAVIQDEPLWIIFQRDMTIRLKEELIMNSFKTIDGRGSSVHIAGGPCITVQFVTNIIIHGIHIHDCKQ GGNTNVRDSPRHYGWRTISDGDGVSIFGGSHVWVDHCSLANCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQR MPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDIRFSKEVTKHEDAPESEWKNWNWRSEGDMLMNGAFFTASGAGASSSSYAKASSLGAR PSSLVGTITMASGALNCRRGSRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63180			Pectin lyase-like superfamily ...		Lus10033037 [exp]	0	1
AT5G63180			Pectin lyase-like superfamily ...		Lus10013667 [exp]	1.4	0.9583
AT5G63180			Pectin lyase-like superfamily ...		Lus10013668 [exp]	2.0	0.9222
AT5G22930			Protein of unknown function (D...		Lus10037944 [exp]	2.2	0.8048
AT4G24780			Pectin lyase-like superfamily ...		Lus10013666 [exp]	10.5	0.8405
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10042166 [exp]	11.8	0.7998
AT3G03770			Leucine-rich repeat protein ki...		Lus10005689 [exp]	12.3	0.8220
AT5G04310			Pectin lyase-like superfamily ...		Lus10040426 [exp]	15.9	0.7532
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10037285 [exp]	16.2	0.8007
AT1G06130		GLX2-4	glyoxalase 2-4 (.1.2)		Lus10017706 [exp]	16.4	0.7166
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10036763 [exp]	16.5	0.7779

Compare expression of checked genes

Lus10033037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.