Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61640 243 / 2e-82 PMSR1, ATMSRA1 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) AT4G25130 239 / 2e-80 PMSR4 peptide met sulfoxide reductase 4 (.1) AT5G07470 236 / 7e-80 PMSR3, ATMSRA3 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 3, peptidemethionine sulfoxide reductase 3 (.1) AT5G07460 230 / 3e-77 PMSR2, ATMSRA2 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 2, peptidemethionine sulfoxide reductase 2 (.1) AT2G18030 94 / 2e-23 Peptide methionine sulfoxide reductase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013673 [exp] 254 / 2e-87 AT5G07470 185 / 4e-60 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 3, peptidemethionine sulfoxide reductase 3 (.1) Lus10043002 [exp] 248 / 1e-83 AT4G25130 346 / 5e-121 peptide met sulfoxide reductase 4 (.1) Lus10032504 [exp] 248 / 1e-83 AT4G25130 348 / 6e-122 peptide met sulfoxide reductase 4 (.1) Lus10019755 [exp] 98 / 5e-24 AT5G13800 589 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Lus10041922 [exp] 92 / 8e-23 AT2G18030 370 / 9e-131 Peptide methionine sulfoxide reductase family protein (.1.2) Lus10028467 [exp] 89 / 9e-22 AT2G18030 364 / 1e-128 Peptide methionine sulfoxide reductase family protein (.1.2) Lus10019388 [exp] 40 / 0.0006 AT3G24490 200 / 2e-60 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G087600 [exp] 307 / 3e-108 AT5G61640 261 / 8e-90 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) Potri.012G091100 [exp] 304 / 6e-107 AT5G61640 251 / 9e-86 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) Potri.015G112268 [exp] 239 / 4e-80 AT4G25130 351 / 4e-123 peptide met sulfoxide reductase 4 (.1) Potri.012G115800 [exp] 238 / 8e-80 AT4G25130 351 / 3e-123 peptide met sulfoxide reductase 4 (.1) Potri.007G012900 [exp] 94 / 2e-23 AT2G18030 361 / 2e-127 Peptide methionine sulfoxide reductase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01625 [flax] [poplar] PMSR Peptide methionine sulfoxide reductase
Representative CDS sequence Show only first row Show all	>Lus10033039 pacid=23177025 polypeptide=Lus10033039 locus=Lus10033039.g ID=Lus10033039.BGIv1.0 annot-version=v1.0 ATGGCCACCGACAACCCATCTCTGGACCCTGATCTCGATCAACCGGAGAACTCAAGCCACCAGTTTGCTGAGTTCGGCGGTGGCTGCTTCTGGGGAGTGG AGCTGGCCTTCCAGCGAGTCCCCGGTGTGGTGAAGACGGAGGTCGGCTATTCTCAGGGAAACGTCCCCGATCCTGACTACAGGCTCGTTTGCACCGGCAC CACCAACCACGTCGAGGTGGTTCGGGTCCAGTTCGACCCACAACTCTGCACTTACGGCAATCTCTTATCTCTATTCTGGAGCCGCATCGACCCGTCAACC CTAAATCGTCAAGGGAACGACGCCGGCACCCAGTATAGGTCAGGGATCTACTACTACAACGAAGATCAGGAACGATTGGCTCAGGAATCGAAGGAAGCCA AGCAATTGGAACTCAAGGAAAAGAAGATCGTAACAGAGATACTTCCGGCTAAGAGATTCTACAGGGCAGAAGAGTATCATCAGCAGTACTTGGAGAAGGG CGGCGGCAGAGGCAGTAAACAATCTGCAGCTAAGGGTTGCAACGATCCCATCCGCTGTTACGGCTAA
AA sequence Show only first row Show all	>Lus10033039 pacid=23177025 polypeptide=Lus10033039 locus=Lus10033039.g ID=Lus10033039.BGIv1.0 annot-version=v1.0 MATDNPSLDPDLDQPENSSHQFAEFGGGCFWGVELAFQRVPGVVKTEVGYSQGNVPDPDYRLVCTGTTNHVEVVRVQFDPQLCTYGNLLSLFWSRIDPST LNRQGNDAGTQYRSGIYYYNEDQERLAQESKEAKQLELKEKKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAAKGCNDPIRCYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61640		PMSR1, ATMSRA1	ARABIDOPSIS THALIANA METHIONIN...		Lus10033039 [exp]	0	1
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10032188 [exp]	1.0	0.8995
AT5G51040			unknown protein		Lus10043024 [exp]	5.5	0.8469
AT5G64230			unknown protein		Lus10010617 [exp]	5.7	0.8460
AT1G34300			lectin protein kinase family p...		Lus10006052 [exp]	5.9	0.8484
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10033664 [exp]	6.5	0.8520
AT4G22240			Plastid-lipid associated prote...		Lus10001099 [exp]	7.0	0.8463
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10005201 [exp]	7.3	0.8158
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10015178 [exp]	7.9	0.8460
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Lus10039857 [exp]	9.7	0.8156
AT5G64230			unknown protein		Lus10033177 [exp]	10.5	0.8377

Compare expression of checked genes

Lus10033039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.