Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50260 546 / 0 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT3G48340 491 / 2e-175 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT3G48350 476 / 3e-169 CEP3 cysteine endopeptidase 3, Cysteine proteinases superfamily protein (.1) AT1G20850 372 / 2e-128 XCP2 xylem cysteine peptidase 2 (.1) AT4G35350 362 / 3e-124 XCP1 xylem cysteine peptidase 1 (.1.2) AT1G47128 351 / 1e-118 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT5G43060 346 / 1e-116 Granulin repeat cysteine protease family protein (.1) AT3G19390 343 / 7e-116 Granulin repeat cysteine protease family protein (.1) AT4G36880 334 / 5e-113 CP1 cysteine proteinase1 (.1) AT5G45890 328 / 4e-111 SAG12 senescence-associated gene 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013674 [exp] 706 / 0 AT5G50260 554 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10018083 [exp] 615 / 0 AT5G50260 533 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10042078 [exp] 613 / 0 AT5G50260 538 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10020730 [exp] 373 / 9e-129 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10003275 [exp] 371 / 3e-128 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10006542 [exp] 370 / 5e-128 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10026362 [exp] 370 / 1e-127 AT5G45890 396 / 2e-138 senescence-associated gene 12 (.1) Lus10020723 [exp] 369 / 2e-127 AT5G45890 398 / 3e-139 senescence-associated gene 12 (.1) Lus10020722 [exp] 369 / 2e-127 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G087400 [exp] 581 / 0 AT5G50260 550 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.012G090900 [exp] 573 / 0 AT5G50260 561 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.015G087500 [exp] 562 / 0 AT5G50260 530 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.008G183100 [exp] 485 / 5e-173 AT5G50260 489 / 2e-174 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.013G118200 [exp] 384 / 5e-134 AT5G45890 387 / 2e-135 senescence-associated gene 12 (.1) Potri.013G126100 [exp] 381 / 3e-132 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1) Potri.011G064900 [exp] 377 / 9e-131 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.005G089100 [exp] 375 / 6e-130 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1) Potri.005G088600 [exp] 375 / 1e-129 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.013G118400 [exp] 371 / 4e-128 AT5G45890 378 / 2e-131 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10033040 pacid=23176982 polypeptide=Lus10033040 locus=Lus10033040.g ID=Lus10033040.BGIv1.0 annot-version=v1.0 ATGGGAGTTGTCAACAAATCTCTGCTCATTGCTCTCTCCTTGGCTCTTCTCCTTGGCGTCTCAAACTGTTTCGATTTCCACCAACACAACTTGGAATCAG AGGACAGCTTGTGGGAGCTGTACGAGAGGTGGAGGAGCCACCACACTGTTTCCAAGTGCCTCCACGACAAGCACAAACGGTTCAACGTATTCAAGCACAA TGTCATGCATGTTCACGAGACCAACAAGATGGACAAGCCCTACAAGCTAAAGCTGAACAAGTTTGCAGACATGACTAACCACGAGTTCAAGAATGCTTTC GCTAATGCCAAGGTTAACCACCATGCCGTGTTCCGGGGCACCCCGCGTGGGAATGGAACCTTCATGTATGAGAATGTTGAGAGAGTCCCACCTTCTGTTG ACTGGAGGAAGAAAGGTGCTGTCACCCCTGTTAAAGATCAAGGCCAGTGTGGTAGTTGCTGGGCATTCTCAACAGTGGTAGCAGTAGAAGGTATCAACTA CATCAAAACAAAGAACCTTGTGTCCTTGTCCGAGCAAGAGCTGGTGGATTGCGACACCGCAGAAAACAAAGGATGCAATGGAGGGTTGATGGAGTATGCA TTTGAGTTCATCAAACAAAACGGTGGACTTACCTCTGAGGACAAGTATCCATACTATGCTCAGGATGGAACTTGTGATTCTGTTAAGGAGGATGCACCAG TTGTGTCGATTGATGGACACCAGAACGTGCCCAGAAACAATGAAGATGCACTGCTCAAAGCTGTTGCAAACCAGCCCGTCTCAGTGGCTATAGATGCTGG GAGCTCCGATTTCCAGTTCTACTCGGAGGGTGTTTTCACAGGAAGCTGTGGAACTGAGCTGAACCATGGAGTTGCAGCTGTAGGATACGGAACCACTGTG GACGGGACCAAATACTGGATTGTGAAAAACTCATGGGGATCTAGTTGGGGAGAAAAAGGATACATCAGGATGCAGAGAGGCATCTCACACAAGGAAGGAC TCTGCGGTATAGCAATGGAGGCTTCTTACCCCATCAAAACCTCGTCTACTAACCCATCATCTCCCAGAGATGAACTCTGA
AA sequence Show only first row Show all	>Lus10033040 pacid=23176982 polypeptide=Lus10033040 locus=Lus10033040.g ID=Lus10033040.BGIv1.0 annot-version=v1.0 MGVVNKSLLIALSLALLLGVSNCFDFHQHNLESEDSLWELYERWRSHHTVSKCLHDKHKRFNVFKHNVMHVHETNKMDKPYKLKLNKFADMTNHEFKNAF ANAKVNHHAVFRGTPRGNGTFMYENVERVPPSVDWRKKGAVTPVKDQGQCGSCWAFSTVVAVEGINYIKTKNLVSLSEQELVDCDTAENKGCNGGLMEYA FEFIKQNGGLTSEDKYPYYAQDGTCDSVKEDAPVVSIDGHQNVPRNNEDALLKAVANQPVSVAIDAGSSDFQFYSEGVFTGSCGTELNHGVAAVGYGTTV DGTKYWIVKNSWGSSWGEKGYIRMQRGISHKEGLCGIAMEASYPIKTSSTNPSSPRDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10033040 [exp]	0	1
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10013674 [exp]	7.5	0.9049
AT4G21620			glycine-rich protein (.1.2)		Lus10011230 [exp]	8.5	0.8697
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10014588 [exp]	13.1	0.8849
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037661 [exp]	17.3	0.8672
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Lus10022441 [exp]	20.9	0.8860
AT5G46060			Protein of unknown function, D...		Lus10005266 [exp]	21.0	0.8838
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10006505 [exp]	21.2	0.8467
AT3G61930			unknown protein		Lus10030203 [exp]	24.2	0.8605
AT1G05675			UDP-Glycosyltransferase superf...		Lus10039041 [exp]	26.1	0.8038
AT2G37030			SAUR-like auxin-responsive pro...		Lus10013808 [exp]	27.8	0.8766

Compare expression of checked genes

Lus10033040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.