Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31880 721 / 0 SOBIR1, EVR SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) AT1G31420 231 / 2e-67 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT2G35620 229 / 7e-67 FEI2 FEI 2, Leucine-rich repeat protein kinase family protein (.1.2) AT5G49660 228 / 5e-64 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G62710 220 / 2e-63 Leucine-rich repeat protein kinase family protein (.1) AT1G09970 223 / 2e-62 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G45780 216 / 7e-62 Leucine-rich repeat protein kinase family protein (.1) AT2G23950 213 / 1e-60 Leucine-rich repeat protein kinase family protein (.1) AT5G63930 216 / 7e-60 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 214 / 7e-59 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013675 [exp] 1090 / 0 AT2G31880 781 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Lus10041953 [exp] 820 / 0 AT2G31880 741 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Lus10017963 [exp] 804 / 0 AT2G31880 745 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Lus10017782 [exp] 233 / 1e-65 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10000509 [exp] 232 / 3e-65 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10018636 [exp] 226 / 2e-63 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10039872 [exp] 224 / 2e-63 AT1G28440 942 / 0.0 HAESA-like 1 (.1) Lus10038382 [exp] 214 / 1e-61 AT4G20270 734 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Lus10034753 [exp] 215 / 2e-61 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G090500 [exp] 787 / 0 AT2G31880 784 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Potri.015G086800 [exp] 786 / 0 AT2G31880 804 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Potri.001G129000 [exp] 230 / 3e-67 AT1G31420 928 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G105000 [exp] 228 / 3e-66 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.002G256500 [exp] 231 / 3e-65 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.004G059100 [exp] 222 / 4e-64 AT5G45780 837 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G021700 [exp] 228 / 6e-64 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G048800 [exp] 227 / 9e-64 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G139700 [exp] 228 / 1e-63 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G068700 [exp] 217 / 3e-62 AT5G45780 819 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10033041 pacid=23177045 polypeptide=Lus10033041 locus=Lus10033041.g ID=Lus10033041.BGIv1.0 annot-version=v1.0 ATGGCCGCTTCCCGCAGACCTCTACCTTTTCTCCTCCTGCTCCTCTTCTCTTTCCTCCTCACTGTCCACGCCACCACGCTCCATCTAAACCCTTCCGACC ATCACTCCATCTCCACCGTCTTCACCAACCTCAAATTCAACTCCTCCACAATCCCTCCCTGTAACATCCCCGGCGTCTTCTGCGAGCGCCGGATCTCTGC CCTTGCCAGCAACACATATGAGCTTAGAATCACCAGACTCGTCTTCAAGTCCAGATCACTTACCGGAACCTTGTCTCCGGCAATCGGCCGACTATCCGAG CTCAAAGAGCTCTCCCTACCCAACAGCCACATCGTTGACCAGATCCCTTCCGAAATAGTCAACTGTACCAAGCTGGAGATTCTTGACCTCGGTAACAACC ACTTTTCTGGAAATGTCCCAAATGCTCTGTCGGCGCTTTTCCGTCTCCGACTCCTTGATCTTTCTTTCAATCAATTCTCAGGGGATTTGGGTTTCCTGAA GCATTTCCCCAATTTGGAGACTCTGTCCCTCGCCAACAATTTCTTCACTGGCCAGGTCCCCAAATCCATTCGGTCTTTCCGTAATTTGCACTTTTCCGAT TTCTCCGGCAACAGGTTTCTCCGAGGGGAGATTCCGGCTCCGGAATTGGATCCCCAGTACCCAAAGCGGTACATTTTAACAGAGAAGGCGAACAGGAACA ACACCTTAGCTTCTGCCCCTACATCATCCGCCATTGCTCAAGCTCCAGGTCCATCATCACAGCAACCCAGGAGTATTAACAAGAAAGGGCGTAATAATAA AGGGAAGAAGAAGCTAGCTGGGTGGCTTTTAGGGTTTGTCGCCGGAGCCACGGCGGGGACAATATCCGGGTTCTTGTTCTGCGTCCTGTTCAGGATGATC TTAGCGACGGTGAGAGGTGCAGGAAAACAGCAAGGGCCGGATATATTCAGTCCAGTGATTAAGAATTCGGATGATCTAGCCTTCTTAGAGAAAGACGATG GGCTGGCTACTCTGGAGATCATCGGAAAAGGCGGCTGCGGAGAAGTTTACAAGGCGGAGCTGCCCGGAAGCAACGGCAAAATGATCGCCATCAAGAAAGT TGTTCAACCCGTGAAGGACGTAGCAGAGTTGACCGATGAAGATTCCAAGCTTTTGAATAAGAAGATGAGACAAATCAGATCGGAGATTAACACGGTGGGA CAAATCAGACACAGGAATCTTCTTTCTCTTCTTGCACACGTCACCCGTCCGGATTGCCATTACCTGGTGTACGAATTCATGAAGAACGGCAGCCTGCAAG ATATATTGGAAGATGTTTCACGAGAGAGGAGAGAGTTGGAGTGGCCTGTTAGGTACAACATCGCGCTTGGGATAGCATCAGGACTCGAGTATCTACACAT CAATCACAACCCAAAAATCATTCACAGAGACTTGAAGCCTGGGAATATCCTCCTGGACGATGACATGGAAGCTAGAATTGCTGATTTCGGGCTGGCCAAA TCGATGCCGGATACCAACACCCACATCACCACATCCAACGTTGCAGGAACAGTGGGGTACATCGCGCCCGAGTATCATCAGACATTTAAGTTCACTGACA AATGTGATATCTACAGTTTCGGGGTGGTGCTGGGGGTTCTCCTGATAGGGAAGCTTCCGTCGGACGATTTCTTCCAGCACACTAGGGAGATGAGCTTGGT GAAATGGCTTAAGAATGTCATGATTTCTGAAGATCCAACCAAGGCAATTGATCCGCGGCTGCTGGGGAAAGGGTATGAAGAACAGATGTTGCTGGTGCTC AAAATCGCCTGCTTTTGCACCATGGAAGATCCAAAACAGAGGCCTAACAGTAAGGATGTTAGGGCCATGTTAGCTCAAATAAAGCACTAG
AA sequence Show only first row Show all	>Lus10033041 pacid=23177045 polypeptide=Lus10033041 locus=Lus10033041.g ID=Lus10033041.BGIv1.0 annot-version=v1.0 MAASRRPLPFLLLLLFSFLLTVHATTLHLNPSDHHSISTVFTNLKFNSSTIPPCNIPGVFCERRISALASNTYELRITRLVFKSRSLTGTLSPAIGRLSE LKELSLPNSHIVDQIPSEIVNCTKLEILDLGNNHFSGNVPNALSALFRLRLLDLSFNQFSGDLGFLKHFPNLETLSLANNFFTGQVPKSIRSFRNLHFSD FSGNRFLRGEIPAPELDPQYPKRYILTEKANRNNTLASAPTSSAIAQAPGPSSQQPRSINKKGRNNKGKKKLAGWLLGFVAGATAGTISGFLFCVLFRMI LATVRGAGKQQGPDIFSPVIKNSDDLAFLEKDDGLATLEIIGKGGCGEVYKAELPGSNGKMIAIKKVVQPVKDVAELTDEDSKLLNKKMRQIRSEINTVG QIRHRNLLSLLAHVTRPDCHYLVYEFMKNGSLQDILEDVSRERRELEWPVRYNIALGIASGLEYLHINHNPKIIHRDLKPGNILLDDDMEARIADFGLAK SMPDTNTHITTSNVAGTVGYIAPEYHQTFKFTDKCDIYSFGVVLGVLLIGKLPSDDFFQHTREMSLVKWLKNVMISEDPTKAIDPRLLGKGYEEQMLLVL KIACFCTMEDPKQRPNSKDVRAMLAQIKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10033041 [exp]	0	1
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10008523 [exp]	1.0	0.9153
AT4G08850			Leucine-rich repeat receptor-l...		Lus10019036 [exp]	4.5	0.8934
AT5G53110			RING/U-box superfamily protein...		Lus10019018 [exp]	5.5	0.8389
AT3G57120			Protein kinase superfamily pro...		Lus10011517 [exp]	5.7	0.8657
AT2G28050			Pentatricopeptide repeat (PPR)...		Lus10021445 [exp]	7.5	0.7636
AT5G57710			Double Clp-N motif-containing ...		Lus10020886 [exp]	8.4	0.8616
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10016635 [exp]	9.2	0.8616
AT1G23850			unknown protein		Lus10030860 [exp]	9.3	0.8911
AT3G47570			Leucine-rich repeat protein ki...		Lus10011387 [exp]	11.3	0.8530
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10034279 [exp]	15.9	0.8367

Compare expression of checked genes

Lus10033041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.