Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01650 476 / 8e-166 RGLG1 RING domain ligase1 (.1) AT5G14420 467 / 9e-163 RGLG2 RING domain ligase2 (.1.2.3.4) AT1G67800 444 / 3e-154 Copine (Calcium-dependent phospholipid-binding protein) family AT5G63970 377 / 1e-128 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2) AT1G79380 350 / 6e-118 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) AT5G07300 92 / 1e-19 BON2 BONZAI 2, Calcium-dependent phospholipid-binding Copine family protein (.1) AT5G61900 89 / 1e-18 CPN1, BON1 COPINE 1, BONZAI 1, Calcium-dependent phospholipid-binding Copine family protein (.1.3) AT1G08860 89 / 1e-18 BON3 BONZAI 3, Calcium-dependent phospholipid-binding Copine family protein (.1) AT5G61910 89 / 2e-18 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036879 [exp] 493 / 2e-172 AT3G01650 555 / 0.0 RING domain ligase1 (.1) Lus10011405 [exp] 476 / 2e-166 AT5G14420 566 / 0.0 RING domain ligase2 (.1.2.3.4) Lus10022294 [exp] 466 / 9e-163 AT3G01650 608 / 0.0 RING domain ligase1 (.1) Lus10006463 [exp] 454 / 3e-158 AT3G01650 547 / 0.0 RING domain ligase1 (.1) Lus10006231 [exp] 452 / 5e-158 AT3G01650 514 / 0.0 RING domain ligase1 (.1) Lus10014587 [exp] 434 / 9e-151 AT3G01650 517 / 0.0 RING domain ligase1 (.1) Lus10032097 [exp] 435 / 5e-150 AT3G01650 514 / 0.0 RING domain ligase1 (.1) Lus10020885 [exp] 377 / 8e-128 AT5G63970 503 / 6e-179 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2) Lus10017774 [exp] 339 / 2e-114 AT3G01650 287 / 9e-94 RING domain ligase1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G090100 [exp] 539 / 0 AT5G14420 575 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.001G342200 [exp] 495 / 3e-174 AT5G14420 572 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.008G183600 [exp] 485 / 1e-169 AT5G14420 571 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.010G049600 [exp] 483 / 5e-169 AT5G14420 580 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.006G002600 [exp] 441 / 1e-153 AT5G14420 521 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.016G003000 [exp] 422 / 7e-146 AT5G14420 500 / 2e-176 RING domain ligase2 (.1.2.3.4) Potri.010G174800 [exp] 404 / 3e-138 AT1G79380 535 / 0.0 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) Potri.008G081300 [exp] 389 / 5e-133 AT1G79380 518 / 0.0 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) Potri.005G065700 [exp] 387 / 4e-132 AT5G63970 551 / 0.0 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2) Potri.007G103700 [exp] 352 / 4e-119 AT5G63970 524 / 0.0 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [flax] [poplar] vWA-like PF07002 [flax] [poplar] Copine Copine
Representative CDS sequence Show only first row Show all	>Lus10033043 pacid=23177055 polypeptide=Lus10033043 locus=Lus10033043.g ID=Lus10033043.BGIv1.0 annot-version=v1.0 ATGGGTGGGAAACAGTCAAAACGATCAGTGTCAAGACAGGGTTCGTATTCATATTCACGGGGCATCCCAAGCTATTCGCAGTCACCATATGGTCAATCAA ATTTTAGTTCGGCACCATACCATCCATATCCACCACCTCTGCCTCAAAGCTATGACAATCAAGCTCAGAATCATACGAGTGTGGACAGGAAGTATTCCAA GATAGATGATAACTATAAAAGCCTGGAGCAGGTTACGGATGCTCTTGCACGTGCTGGCCTGGAATCTTCAAATCTCATTGTGGGAATTGATTTTACAAAG AGCAATGAGTGGACAGGTGCCAGATCATTCAACAGGAAAAGTCTACATCATATTGGAGATGATGATCAAAATCCATATGAACAAGCAATCTCAATCATTG GCAAGACGCTATCATCTTTTGACGAGGACAACCTCATCCCATGTTTTGGCTTTGGCGATGCATCAACTCATGATCAAGAAGTTTTCAGCTTTTACCCTGA TGAGAGGTTTTGCAATGGTTTTGAGGAAGTGTTGACACGATATAGAGAAATCGTCCCTCAATTAAAACTTGCAGGACCTACGTCGTTTGCTCCTGTTATT GAGATGGCCATTACTATAGTTGAGCAAAGTCATGGTCAGTACCATGTTCTAGTAATCATAGCTGATGGACAGGTTACCAGAAGTGTTGATACCGTAAATG GCCAGCTTAGTCCACAGGAAACTAGGACAGTTGAAGCTATTGTGAAAGCCAGTGAGTATCCCCTGTCAATTATCTTAGTTGGGGTTGGAGATGGACCGTG GGACATGATGAAGTTTGTAAAGTTTACCGAAATAATGTCAAAGAATATGGACCGCTCCAGAAAAGAAGCTGCATTTGCTCTTGCAGCTCTGATGGAAATA CCTTCTCAGTATAAAGCAACACTTGAGCTTAATATATTAGGTACCTCCAGAGGGAAAGGCATCGATAGAATTCCTTTGCCTCCTCCCCAGTATGGTGCCT CATTTAGCAGTCCGAAACTTTCACTATCAAACAGCTTTCTTCCAAGTGCACCGTCTTCTGCTAGACAGACCGACTATGATATCCAACATCTGCCTAGTTC TTCCGATAACCATTTGTGTCCCATATGCCTCACAGACCCAAAGAACATGGCATTTGGCTGCGGACATCAGGTAATGTACTCCCAACTCAACGGTTATATT CCTCTTTACATGGATCAAAACTTGCAGACAAGTGAAAATGCGAAAGGTCCGTTCCTTAACGCCAATCATTCATGTGTTACTACTACTACAGACATGCTGC GACTGTGGACAAGACCTTACGTCATGCCCCATATGCCGAACAGCCATTGA
AA sequence Show only first row Show all	>Lus10033043 pacid=23177055 polypeptide=Lus10033043 locus=Lus10033043.g ID=Lus10033043.BGIv1.0 annot-version=v1.0 MGGKQSKRSVSRQGSYSYSRGIPSYSQSPYGQSNFSSAPYHPYPPPLPQSYDNQAQNHTSVDRKYSKIDDNYKSLEQVTDALARAGLESSNLIVGIDFTK SNEWTGARSFNRKSLHHIGDDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDERFCNGFEEVLTRYREIVPQLKLAGPTSFAPVI EMAITIVEQSHGQYHVLVIIADGQVTRSVDTVNGQLSPQETRTVEAIVKASEYPLSIILVGVGDGPWDMMKFVKFTEIMSKNMDRSRKEAAFALAALMEI PSQYKATLELNILGTSRGKGIDRIPLPPPQYGASFSSPKLSLSNSFLPSAPSSARQTDYDIQHLPSSSDNHLCPICLTDPKNMAFGCGHQVMYSQLNGYI PLYMDQNLQTSENAKGPFLNANHSCVTTTTDMLRLWTRPYVMPHMPNSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10033043 [exp]	0	1
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10032146 [exp]	1.0	0.8986
AT4G19420			Pectinacetylesterase family pr...		Lus10034766 [exp]	3.5	0.8771
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Lus10025472 [exp]	3.7	0.8565
					Lus10022823 [exp]	6.3	0.8648
AT2G25220			Protein kinase superfamily pro...		Lus10005345 [exp]	7.5	0.8358
AT2G24800			Peroxidase superfamily protein...		Lus10026903 [exp]	8.7	0.8667
AT2G44150		SDG7, ASHH3	SET DOMAIN-CONTAINING PROTEIN ...		Lus10039118 [exp]	13.2	0.8225
AT1G12244			Polynucleotidyl transferase, r...		Lus10035777 [exp]	13.4	0.8430
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10039667 [exp]	14.4	0.8534
					Lus10011890 [exp]	15.9	0.8585

Compare expression of checked genes

Lus10033043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.