Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002071 [exp] 59 / 4e-11 ND / Lus10015042 [exp] 57 / 2e-10 ND / Lus10010604 [exp] 56 / 6e-10 ND / Lus10038678 [exp] 56 / 8e-10 ND / Lus10021528 [exp] 56 / 9e-10 ND / Lus10014487 [exp] 55 / 9e-10 ND / Lus10010826 [exp] 55 / 1e-09 ND / Lus10039674 [exp] 54 / 3e-09 ND / Lus10024215 [exp] 54 / 3e-09 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033046 pacid=23177001 polypeptide=Lus10033046 locus=Lus10033046.g ID=Lus10033046.BGIv1.0 annot-version=v1.0 ATGGATCTGCAAACTCCTCTGCAGAACCTCGGCTGGATGAGGGTTTTGGAAGCTCAAGTTGGTCTCGAGTATTCTCACCCTGTCAGGCAGTTTTATGGCA ATCTCCATTTTGAACCGGGTTTGTCTCCAGCTTGCTTCACAACTTTTGTAGAAGGATACATGCTCTTCACCACTGCCGACATGATGAGTTCATTTCTCGG AATGCCAAATCAAGGAGCTTCCGTCACAACTGAGACAAATTTTAGAGCGACTTGGTACGGTATTAAAGATCGTTGGGGTGCTGCTAACAGTTACGGAGTT CTCCGTGCACACAACAAGTGTTTCGTCGTGGTGTCTTCTCTGTTCTGTCAAAGCGCGAAGCTTGTTCTTCTCGGTCTGAAGAAGAAGAAGTCTTGA
AA sequence Show only first row Show all	>Lus10033046 pacid=23177001 polypeptide=Lus10033046 locus=Lus10033046.g ID=Lus10033046.BGIv1.0 annot-version=v1.0 MDLQTPLQNLGWMRVLEAQVGLEYSHPVRQFYGNLHFEPGLSPACFTTFVEGYMLFTTADMMSSFLGMPNQGASVTTETNFRATWYGIKDRWGAANSYGV LRAHNKCFVVVSSLFCQSAKLVLLGLKKKKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10033046 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10021392 [exp]	3.2	0.8118
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Lus10005320 [exp]	3.7	0.7076
AT1G77980	MADS	AGL66	AGAMOUS-like 66 (.1)		Lus10039704 [exp]	4.6	0.7776
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10025522 [exp]	8.1	0.6954
					Lus10000901 [exp]	8.5	0.6900
AT1G26820		RNS3	ribonuclease 3 (.1)		Lus10003110 [exp]	8.9	0.7781
					Lus10025786 [exp]	8.9	0.6955
AT2G22180			hydroxyproline-rich glycoprote...		Lus10019667 [exp]	10.7	0.7222
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10030032 [exp]	14.0	0.7562
AT3G07870			F-box and associated interacti...		Lus10012356 [exp]	20.4	0.6561

Compare expression of checked genes

Lus10033046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.