Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50240 365 / 1e-128 PIMT2, AtPIMT2 Arabidopsis thaliana protein-l-isoaspartate methyltransferase 2, protein-l-isoaspartate methyltransferase 2 (.1.2.3) AT3G48330 358 / 5e-127 ATPIMT1, PIMT1 Arabidopsis thaliana protein-l-isoaspartate methyltransferase 1, protein-l-isoaspartate methyltransferase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017776 [exp] 456 / 3e-164 AT5G50240 372 / 4e-130 Arabidopsis thaliana protein-l-isoaspartate methyltransferase 2, protein-l-isoaspartate methyltransferase 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G090300 [exp] 392 / 3e-139 AT3G48330 380 / 5e-134 Arabidopsis thaliana protein-l-isoaspartate methyltransferase 1, protein-l-isoaspartate methyltransferase 1 (.1.2) Potri.015G086600 [exp] 392 / 4e-138 AT3G48330 374 / 8e-131 Arabidopsis thaliana protein-l-isoaspartate methyltransferase 1, protein-l-isoaspartate methyltransferase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01135 [flax] [poplar] PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Representative CDS sequence Show only first row Show all	>Lus10033049 pacid=23177003 polypeptide=Lus10033049 locus=Lus10033049.g ID=Lus10033049.BGIv1.0 annot-version=v1.0 ATGGAGAGATACTGGTCTGGTAATAGCATTGATAAGAACAAGGGTATGGTGGAAAATTTGAAGCGTTACGGAGTCTTCAATTCAGACAAAGTGGCTCAAG TAATGGATTCTATCGATAGGGCTTTGTTTGTACCGGATGGAACTGCTGCTTATGTTGATAGCCCCATGGAAATTGGGTATAATGCCACTATATCTGCACC TCATATGCACGCAACTTGCCTTCAGTTGTTGGAGGATAATCTGAAGCCTGGCATGCATGCTCTGGATGTTGGTTCAGGGACTGGATATTTGACTGCATGC TTTGCAATGATGGTTGGCCCAGAAGGCCGAGCTATTGGCGTGGATCATATTCCTGAGCTTGTAGCTACATCAATAAAAAATGTCGAGAAAAGTATTGCAG CTTCTTTGTTGAAAGACTGTTCTCTTCAACTGCATGCTGGAGATGGAAGGCAAGGTTGGCCAGAGTTTGCACCTTACAACGCCATCCACGTTGGGGCTGC AGCACCAGAAATCCCGCAGCCACTGATTGACCAGTTGAAGCCCGGTGGACGAATGGTGATTCCAGTGGGGAAAATTTTTCAGGAGTTGAAGGTAGTTGAC AAGAATCAGGATGGGTCCATTAGCGTACAAAGTGAAACGTCTGTGCGATACATCCCGCTGACAGACAAAGATGCTCAATTGGGAGGCAACTGA
AA sequence Show only first row Show all	>Lus10033049 pacid=23177003 polypeptide=Lus10033049 locus=Lus10033049.g ID=Lus10033049.BGIv1.0 annot-version=v1.0 MERYWSGNSIDKNKGMVENLKRYGVFNSDKVAQVMDSIDRALFVPDGTAAYVDSPMEIGYNATISAPHMHATCLQLLEDNLKPGMHALDVGSGTGYLTAC FAMMVGPEGRAIGVDHIPELVATSIKNVEKSIAASLLKDCSLQLHAGDGRQGWPEFAPYNAIHVGAAAPEIPQPLIDQLKPGGRMVIPVGKIFQELKVVD KNQDGSISVQSETSVRYIPLTDKDAQLGGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50240		PIMT2, AtPIMT2	Arabidopsis thaliana protein-l...		Lus10033049 [exp]	0	1
AT2G44530			Phosphoribosyltransferase fami...		Lus10012074 [exp]	3.3	0.8009
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10028249 [exp]	6.5	0.7975
AT4G37090			unknown protein		Lus10019656 [exp]	13.1	0.7658
AT3G21200		PGR7	proton gradient regulation 7 (...		Lus10037330 [exp]	13.8	0.7741
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10030956 [exp]	17.6	0.7369
AT4G34340		TAF8	TBP-associated factor 8 (.1)		Lus10026530 [exp]	18.2	0.7755
AT2G37400			Tetratricopeptide repeat (TPR)...		Lus10025299 [exp]	20.0	0.7839
AT1G31790			Tetratricopeptide repeat (TPR)...		Lus10037288 [exp]	23.0	0.7486
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Lus10013341 [exp]	26.7	0.7692
AT5G27990			Pre-rRNA-processing protein TS...		Lus10005806 [exp]	27.8	0.7486

Compare expression of checked genes

Lus10033049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.