Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11020 420 / 9e-149 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G22120 168 / 6e-50 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT1G50440 122 / 6e-33 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) AT4G32670 52 / 5e-07 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G60580 42 / 0.0004 RING/U-box superfamily protein (.1.2.3.4) AT2G02960 40 / 0.001 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017764 [exp] 357 / 7e-126 AT1G11020 254 / 3e-85 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10019687 [exp] 169 / 4e-50 AT2G22120 546 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10016426 [exp] 169 / 4e-50 AT2G22120 543 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10034832 [exp] 123 / 1e-31 AT1G50440 379 / 7e-131 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Lus10033381 [exp] 113 / 1e-28 AT1G50440 340 / 1e-117 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Lus10021482 [exp] 47 / 1e-05 AT5G60580 469 / 6e-163 RING/U-box superfamily protein (.1.2.3.4) Lus10022585 [exp] 46 / 2e-05 AT5G60580 474 / 1e-164 RING/U-box superfamily protein (.1.2.3.4) Lus10010011 [exp] 41 / 0.0005 AT1G02610 174 / 2e-54 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10025031 [exp] 41 / 0.0006 AT1G02610 178 / 6e-56 RING/FYVE/PHD zinc finger superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G073400 [exp] 476 / 3e-171 AT1G11020 389 / 2e-136 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G154800 [exp] 476 / 1e-170 AT1G11020 406 / 4e-143 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.005G081500 [exp] 170 / 1e-50 AT2G22120 521 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.007G085900 [exp] 138 / 8e-39 AT2G22120 388 / 4e-136 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G252900 [exp] 121 / 1e-32 AT1G50440 370 / 5e-131 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Potri.008G005800 [exp] 117 / 4e-31 AT1G50440 374 / 2e-132 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Potri.002G196600 [exp] 47 / 4e-06 AT1G02610 183 / 2e-58 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.014G121900 [exp] 47 / 5e-06 AT1G02610 181 / 2e-57 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10033053 pacid=23177042 polypeptide=Lus10033053 locus=Lus10033053.g ID=Lus10033053.BGIv1.0 annot-version=v1.0 ATGAAAGCTGAAGTGCAGATGGAGCCAGCAGCAAGCGGGGATAACCATACTGACTCCGATCCTCTGCTACAAAATCAGGTGGATTCGTCTTTGTTGTCGC CAGGTAGTTCCAGCGAGATTACGAATCTTGATGATGTCGAGAACGGTTCCGTTCCTACGTGTCGCATTTGTCTCGAGAGCGATTGCGAACCAGGAGATGA GCTGATATCTCCATGCATGTGCAAAGGCACCCAGCAGTTTGTGCACCGTGTGTGCCTTGATCATTGGCGTGCAGTAAAGGAAGGATTTGCATTCTCCCAT TGCACTACTTGCAAAGCACAGTTTCATCTTCGAGTTGAACTGTTTGAGCAGAATTCTTGGCGTAAAGTAAAATTCAGGCTCTTTGTAACGAGGGATGTTC TTCTAGTATTTTTGGCCATACAAACAATGATTGCTGCTATGGGTGGAATTGCTTTCCTAATGGACAAAGATGGAGCCTTTAGGAATTCATTCAGTGATGG TTGGGACCGAATACTGTCTAAGCATCCAATTCCCTTCTATTATTGTATAGGAGTAATGGCTTTCTTTGTTATGCTTGGATTTTTCGGCCTTATACTTCAT TGCTCGACCCTCAACAGTAGCGATCCCCGGATGGCTGGATGCCAGAACTGCTGCTATGGATGGGGAATCTTGGACTGCTTCCCTGCATCCATGGAAGCAT GCTTTGCCCTGGCAGTGGTATTTGTTGTCATATTTGCCATCCTCGGCATAGCTTATGGCTTCCTTGCTGCCACCATGGCTATCCAAAAGATATGGCAGAG ACATTACCACATCCTGGCAAAGAGCGAGCTAACCAAGGAGTACATAGTGGAGGATCTTCACGGTTGTTACTCCCCGCCAAAACTGGACGCAGAGCACGAA GAGAAACTGAAAATGCTGAAACTTTTGTAG
AA sequence Show only first row Show all	>Lus10033053 pacid=23177042 polypeptide=Lus10033053 locus=Lus10033053.g ID=Lus10033053.BGIv1.0 annot-version=v1.0 MKAEVQMEPAASGDNHTDSDPLLQNQVDSSLLSPGSSSEITNLDDVENGSVPTCRICLESDCEPGDELISPCMCKGTQQFVHRVCLDHWRAVKEGFAFSH CTTCKAQFHLRVELFEQNSWRKVKFRLFVTRDVLLVFLAIQTMIAAMGGIAFLMDKDGAFRNSFSDGWDRILSKHPIPFYYCIGVMAFFVMLGFFGLILH CSTLNSSDPRMAGCQNCCYGWGILDCFPASMEACFALAVVFVVIFAILGIAYGFLAATMAIQKIWQRHYHILAKSELTKEYIVEDLHGCYSPPKLDAEHE EKLKMLKLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11020			RING/FYVE/PHD zinc finger supe...		Lus10033053 [exp]	0	1
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10024835 [exp]	7.0	0.9497
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10014187 [exp]	11.9	0.9440
AT1G05620		NSH2, URH2	nucleoside hydrolase 2, uridin...		Lus10022062 [exp]	14.0	0.9351
AT4G37410		CYP81F4	"cytochrome P450, family 81, s...		Lus10024083 [exp]	14.9	0.9394
AT2G24550			unknown protein		Lus10026939 [exp]	16.5	0.9391
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10036978 [exp]	17.0	0.9461
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10004375 [exp]	21.2	0.9414
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10019837 [exp]	21.8	0.9348
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10025837 [exp]	22.6	0.9407
AT3G15290			3-hydroxyacyl-CoA dehydrogenas...		Lus10020828 [exp]	24.4	0.9391

Compare expression of checked genes

Lus10033053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.