Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18660 54 / 8e-10 AtPNP-A, PNP-A, EXLB3 plant natriuretic peptide A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019444 [exp] 168 / 1e-54 AT2G18660 68 / 3e-15 plant natriuretic peptide A (.1) Lus10013118 [exp] 145 / 2e-45 AT4G30380 67 / 5e-15 Barwin-related endoglucanase (.1) Lus10017763 [exp] 111 / 7e-33 ND 35 / 0.001 Lus10030078 [exp] 96 / 5e-26 AT2G18660 84 / 3e-21 plant natriuretic peptide A (.1) Lus10042435 [exp] 62 / 8e-13 AT4G30380 101 / 2e-28 Barwin-related endoglucanase (.1) Lus10026232 [exp] 49 / 2e-07 AT4G30380 90 / 2e-23 Barwin-related endoglucanase (.1) Lus10020131 [exp] 46 / 1e-06 AT2G18660 59 / 2e-11 plant natriuretic peptide A (.1) Lus10020130 [exp] 45 / 2e-06 AT2G18660 70 / 2e-15 plant natriuretic peptide A (.1) Lus10026930 [exp] 44 / 9e-06 AT2G18660 69 / 6e-15 plant natriuretic peptide A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G155000 [exp] 141 / 9e-44 AT2G18660 59 / 1e-11 plant natriuretic peptide A (.1) Potri.018G031901 [exp] 140 / 2e-43 AT4G30380 57 / 3e-11 Barwin-related endoglucanase (.1) Potri.006G249500 [exp] 134 / 5e-41 AT4G30380 61 / 1e-12 Barwin-related endoglucanase (.1) Potri.018G029100 [exp] 101 / 3e-28 AT2G18660 94 / 2e-25 plant natriuretic peptide A (.1) Potri.006G252200 [exp] 99 / 2e-27 AT2G18660 91 / 2e-24 plant natriuretic peptide A (.1) Potri.003G218300 [exp] 67 / 6e-15 AT4G30380 86 / 2e-22 Barwin-related endoglucanase (.1) Potri.018G098200 [exp] 59 / 6e-12 AT4G30380 122 / 5e-37 Barwin-related endoglucanase (.1) Potri.006G179300 [exp] 49 / 7e-08 AT2G18660 116 / 1e-34 plant natriuretic peptide A (.1) Potri.018G101600 [exp] 47 / 2e-07 AT2G18660 113 / 3e-33 plant natriuretic peptide A (.1) Potri.006G176300 [exp] 44 / 4e-06 AT4G30380 165 / 6e-54 Barwin-related endoglucanase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10033054 pacid=23176965 polypeptide=Lus10033054 locus=Lus10033054.g ID=Lus10033054.BGIv1.0 annot-version=v1.0 ATGTCATCAAGCCTAGATTTTTCCTTCCTCCTCCTTATTATAACGATTCTGCAACTCTCCTACTGCTGCATCGCCGATATTGGCACCGCGTCCTGGTACG CTCCTCCTTATCTACCCACGGCGTGTAACGGCGGCGACAGGTCGCAATTCCCGACCAGCAATCTGTTTGCGGCGGCAGGGGAAGGGATATGGGACAATGG GGCGGCCTGCGGGAGACAGTACAAAGTTAGGTGTATTAGCTCTGTCGCACGAGGTTCCTGTAAGCCTGATCAGACTATTCAGGTGAAGATCGTCGATCGA GCTCGGACATTGGTCTCTCCGCCGTCAGCCAGAGGAACCACTATTGTTCTCCCTCTTTTGTTTCTCCCCCAGCGTGTTGGGGGGTCAGCCGCGAGCCCCC CAGCCAGTACCGGCGTCAACATTGAGTGGCAACAGTAA
AA sequence Show only first row Show all	>Lus10033054 pacid=23176965 polypeptide=Lus10033054 locus=Lus10033054.g ID=Lus10033054.BGIv1.0 annot-version=v1.0 MSSSLDFSFLLLIITILQLSYCCIADIGTASWYAPPYLPTACNGGDRSQFPTSNLFAAAGEGIWDNGAACGRQYKVRCISSVARGSCKPDQTIQVKIVDR ARTLVSPPSARGTTIVLPLLFLPQRVGGSAASPPASTGVNIEWQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10033054 [exp]	0	1
					Lus10026092 [exp]	4.7	0.8326
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10026112 [exp]	6.5	0.8198
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10018392 [exp]	7.3	0.8186
AT5G56610			Phosphotyrosine protein phosph...		Lus10034998 [exp]	14.1	0.7739
AT4G32630			ArfGap/RecO-like zinc finger d...		Lus10022113 [exp]	14.8	0.7856
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10039364 [exp]	17.7	0.7983
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Lus10010453 [exp]	18.3	0.7716
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10008708 [exp]	19.2	0.7228
					Lus10003285 [exp]	22.4	0.7497
					Lus10004996 [exp]	23.5	0.7497

Compare expression of checked genes

Lus10033054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.