Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19980 464 / 5e-165 GONST4 golgi nucleotide sugar transporter 4 (.1) AT1G76340 314 / 9e-106 GONST3 golgi nucleotide sugar transporter 3 (.1) AT4G31600 78 / 4e-16 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) AT1G07290 72 / 9e-14 GONST2 golgi nucleotide sugar transporter 2 (.1) AT2G13650 61 / 4e-10 GONST1 golgi nucleotide sugar transporter 1 (.1.2.3) AT4G32272 51 / 6e-07 Nucleotide/sugar transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017759 [exp] 635 / 0 AT5G19980 495 / 2e-177 golgi nucleotide sugar transporter 4 (.1) Lus10017141 [exp] 553 / 0 AT5G19980 489 / 4e-175 golgi nucleotide sugar transporter 4 (.1) Lus10018311 [exp] 543 / 0 AT5G19980 478 / 8e-171 golgi nucleotide sugar transporter 4 (.1) Lus10034672 [exp] 313 / 2e-105 AT1G76340 489 / 3e-174 golgi nucleotide sugar transporter 3 (.1) Lus10037000 [exp] 312 / 8e-105 AT1G76340 549 / 0.0 golgi nucleotide sugar transporter 3 (.1) Lus10034674 [exp] 306 / 5e-103 AT1G76340 473 / 2e-168 golgi nucleotide sugar transporter 3 (.1) Lus10015806 [exp] 255 / 3e-83 AT1G76340 434 / 2e-153 golgi nucleotide sugar transporter 3 (.1) Lus10024126 [exp] 75 / 8e-15 AT2G13650 535 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Lus10005865 [exp] 74 / 2e-14 AT1G07290 521 / 0.0 golgi nucleotide sugar transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G071700 [exp] 508 / 0 AT5G19980 484 / 6e-173 golgi nucleotide sugar transporter 4 (.1) Potri.010G057600 [exp] 312 / 8e-105 AT1G76340 557 / 0.0 golgi nucleotide sugar transporter 3 (.1) Potri.008G177700 [exp] 307 / 4e-103 AT1G76340 540 / 0.0 golgi nucleotide sugar transporter 3 (.1) Potri.006G270700 [exp] 78 / 6e-16 AT4G31600 450 / 3e-160 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.007G106400 [exp] 77 / 1e-15 AT2G13650 513 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.018G009400 [exp] 74 / 9e-15 AT4G31600 447 / 3e-159 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.005G062900 [exp] 72 / 9e-14 AT2G13650 534 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.009G044000 [exp] 67 / 2e-12 AT1G07290 472 / 5e-167 golgi nucleotide sugar transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF08449 [flax] [poplar] UAA UAA transporter family
Representative CDS sequence Show only first row Show all	>Lus10033058 pacid=23177030 polypeptide=Lus10033058 locus=Lus10033058.g ID=Lus10033058.BGIv1.0 annot-version=v1.0 ATGTCCGCGATTCGAGCAGATCCAACAAATCAGCTCGCTACGAGCAGCGTGGTGATAGGTTACGCTCTCTGCTCCAGTTTGCTCGCCGTGATTAACAAGT ACGCCATCACTAAATTCAACTACCCTGGACTCCTCACCTCCCTACAGTACTTGACATCCGCGCTTGGCGTCTGGGTTTTAGGCAAATTAGGGTTCTTGTA CCACGACGCCTTCGACCTCAACACTGCCAAGAAGTTCCTCCCAGCTGCCTTCGTTTTCTACCTCGCCATCTTCACCAACACCAATCTCCTCCGCCATGCT AATGTCGACACCTTCATCGTCTTCAGATCTCTAACCCCTCTCTTGGTTGCCATAGCAGATACTTTCTTCAGGAAACAGCCCATCCCATCCAGGCTTACTT TCTTGGCCCTGTTCGTCATTTTGGGAGGTGCCGTTGGTTATGTGGCTACTGATTCTTCTTTTACGCTCACTGCATATTCATGGGCTTTGGCTTATCTAGT GACAATTACATCTGAAATGGTTTACATCAAGCACATTGTGTCCAGCATTGGGTTAAACACTTGGGGTTTGGTGTTGTACAACAATCTGCTGTCTTTGATC ATCTCTCCAGTGTTTCTGGTTCTCACTGGGGAGTATACTGAAGTGTTTGATGCTTTAGGGAACGGTGGGGATTGGTTCAAGGTTGATGCTTTCTCTGCAG TGGCATTGTCTTGTGTGTTTGGTGTCCTCATTAGTTTCTTTGGATTCGCTGCCAGGAAGGCGATTTCTGCTACCGCCTTTACTGTGACTGGTGTGGTTAA CAAGTTCCTTACTGTTGTGATCAATGTGATGATCTGGGATAAGCATGCCACTCCCTTTGGCTTGCTTTGCCTCCTGTTCACGCTTTGTGGAGGGGTTCTC TATCAACAGTCTGTCACTCCGACTCGGGTTGAGCCTGTCTCAACAAGACAGAAGGACAATGGAGAAGTGGATGCTGAGAATGTGTTGCTTGTCGATAGAA AGGAAGCTGCTGAAGATAAGTAG
AA sequence Show only first row Show all	>Lus10033058 pacid=23177030 polypeptide=Lus10033058 locus=Lus10033058.g ID=Lus10033058.BGIv1.0 annot-version=v1.0 MSAIRADPTNQLATSSVVIGYALCSSLLAVINKYAITKFNYPGLLTSLQYLTSALGVWVLGKLGFLYHDAFDLNTAKKFLPAAFVFYLAIFTNTNLLRHA NVDTFIVFRSLTPLLVAIADTFFRKQPIPSRLTFLALFVILGGAVGYVATDSSFTLTAYSWALAYLVTITSEMVYIKHIVSSIGLNTWGLVLYNNLLSLI ISPVFLVLTGEYTEVFDALGNGGDWFKVDAFSAVALSCVFGVLISFFGFAARKAISATAFTVTGVVNKFLTVVINVMIWDKHATPFGLLCLLFTLCGGVL YQQSVTPTRVEPVSTRQKDNGEVDAENVLLVDRKEAAEDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10033058 [exp]	0	1
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10021478 [exp]	4.0	0.9225
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10018581 [exp]	9.2	0.8927
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Lus10016249 [exp]	10.2	0.9092
AT5G19990		ATSUG1, RPT6A	regulatory particle triple-A A...		Lus10017762 [exp]	12.8	0.8874
AT3G50120			Plant protein of unknown funct...		Lus10010064 [exp]	14.5	0.8956
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10003134 [exp]	23.7	0.8954
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010067 [exp]	25.0	0.8942
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Lus10016938 [exp]	26.5	0.8703
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10043449 [exp]	28.0	0.8904
AT5G62680			Major facilitator superfamily ...		Lus10033106 [exp]	29.3	0.8769

Compare expression of checked genes

Lus10033058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.