Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52780 84 / 1e-17 Protein of unknown function (DUF2921) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G175600 [exp] 88 / 5e-19 AT1G52780 1107 / 0.0 Protein of unknown function (DUF2921) (.1) Potri.006G187000 [exp] 67 / 4e-12 AT1G52780 424 / 4e-131 Protein of unknown function (DUF2921) (.1) Potri.003G087400 [exp] 42 / 0.0003 AT4G21700 607 / 0.0 Protein of unknown function (DUF2921) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11145 [flax] [poplar] DUF2921 Protein of unknown function (DUF2921)
Representative CDS sequence Show only first row Show all	>Lus10033064 pacid=23176998 polypeptide=Lus10033064 locus=Lus10033064.g ID=Lus10033064.BGIv1.0 annot-version=v1.0 ATGAGTAGTTTGGGGAGAAGGAAAACAAATGGCAATTACTTTGATAAGTTTCATATTTCCTCTCAATTGGGAAGCCTATCTAAGTACCAATTTTCTGCTG ATGAGCTTCTGTCACAAGTTTGTAGCAATTCCTACTTGAATCAGAACATGTTGAGTGATGGAAAGGTCAAGCTGTATGAAAGAGACGGTTTCTGTCACAC TTTATACCACATTCTAAACAATGAACTTCTGAAACTGATACCAACCTTGGCATCAACTAGTGTCAATAGAAGTAATAAACTCGGGCCATTCGATCTCTAC AGTCATGGAGATTGTACAGCGATGAAGCTTCTGATTCATCATGTGAGATGTGTAGCAGGCTATGATGAGGAGAACACCAGAATTTCCAAGGTAGCTGCTG TGTTGAGAATTGTTGGTTCGTCATCGCAACAATTTGTTACTAGTAGGGGAAGGACTTGGCTATCCACAATGACACTTTCTGCAGAAGGGATGTGGAGAAA TGGCAAGGAGCTTTGCATGGTATGTTGTGTTGGAAACATTACTAGTAGTAGCAGTAACAACTATGAGCTTACCTTTGCTGCAGAATCTGTTACTACCACC ACTTATGCTATTCAACTAGATATTATGTCTTTAGGGTCATTCAGCCGTGAGGAACAACAAAGGATGAGTGCATCAAATGATGATGAGGACAATGACATGA TTCCAGTGTCGAGGCTTCTCCAACTTATGTCCTCATCGAACGAGGTTTCACTCTTCTTTGAAGGTATATACAACCAAGTTAATGGTAAGATGCATCTAGT TGGCTGCAGAGATGTTCGATCCATGAACATTAGCACAGAGGTTGAACATGGTATGGACTGTCAATATGAGATAGGAATACAGTATTTACCTACTAGTACA AGGTGGCTACTCAATCCAAAAGCTAGAATCTCAATCAACAGTAAAAGGGACAAATAA
AA sequence Show only first row Show all	>Lus10033064 pacid=23176998 polypeptide=Lus10033064 locus=Lus10033064.g ID=Lus10033064.BGIv1.0 annot-version=v1.0 MSSLGRRKTNGNYFDKFHISSQLGSLSKYQFSADELLSQVCSNSYLNQNMLSDGKVKLYERDGFCHTLYHILNNELLKLIPTLASTSVNRSNKLGPFDLY SHGDCTAMKLLIHHVRCVAGYDEENTRISKVAAVLRIVGSSSQQFVTSRGRTWLSTMTLSAEGMWRNGKELCMVCCVGNITSSSSNNYELTFAAESVTTT TYAIQLDIMSLGSFSREEQQRMSASNDDEDNDMIPVSRLLQLMSSSNEVSLFFEGIYNQVNGKMHLVGCRDVRSMNISTEVEHGMDCQYEIGIQYLPTST RWLLNPKARISINSKRDK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52780			Protein of unknown function (D...		Lus10033064 [exp]	0	1
AT5G17390			Adenine nucleotide alpha hydro...		Lus10007982 [exp]	6.2	0.7697
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10014655 [exp]	8.1	0.7335
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029184 [exp]	9.2	0.7930
AT4G04750			Major facilitator superfamily ...		Lus10018957 [exp]	9.6	0.7552
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10021554 [exp]	11.6	0.7489
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10016725 [exp]	13.3	0.7217
AT4G18050		ABCB9, PGP9	ATP-binding cassette B9, P-gly...		Lus10004583 [exp]	14.0	0.7465
AT4G12410			SAUR-like auxin-responsive pro...		Lus10024600 [exp]	14.1	0.7952
AT5G05340			Peroxidase superfamily protein...		Lus10006534 [exp]	19.6	0.7482
AT4G18360			Aldolase-type TIM barrel famil...		Lus10042495 [exp]	23.0	0.7005

Compare expression of checked genes

Lus10033064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.